BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0693000 Os03g0693000|J075066G24
(83 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0693000 Protein of unknown function DUF1336 domain con... 176 5e-45
AK121415 105 7e-24
Os03g0759000 Protein of unknown function DUF1336 domain con... 103 3e-23
Os12g0577600 Protein of unknown function DUF1336 domain con... 100 4e-22
>Os03g0693000 Protein of unknown function DUF1336 domain containing protein
Length = 83
Score = 176 bits (445), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MFASYVYLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQ 60
MFASYVYLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQ
Sbjct: 1 MFASYVYLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQ 60
Query: 61 ILCCVRLNGIDYTQYKPLMTHGA 83
ILCCVRLNGIDYTQYKPLMTHGA
Sbjct: 61 ILCCVRLNGIDYTQYKPLMTHGA 83
>AK121415
Length = 542
Score = 105 bits (262), Expect = 7e-24, Method: Composition-based stats.
Identities = 44/74 (59%), Positives = 59/74 (79%)
Query: 7 YLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVR 66
+ +G+NYFEVD+D+HRFSYI+RKG E+F +RL +LD+GLTIQ K +ELPEQ+LCCVR
Sbjct: 462 FFEGENYFEVDLDIHRFSYIARKGLESFRERLNNGILDLGLTIQAQKQDELPEQVLCCVR 521
Query: 67 LNGIDYTQYKPLMT 80
LN ID+ + + T
Sbjct: 522 LNKIDFINHGQIPT 535
>Os03g0759000 Protein of unknown function DUF1336 domain containing protein
Length = 84
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 57/69 (82%)
Query: 5 YVYLQGDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCC 64
++ +QG NYFE+D+D+HRFS+ISRKG E F +RLK +LD+GLTIQ KAEELPE +LCC
Sbjct: 2 FIVMQGPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQAQKAEELPEHVLCC 61
Query: 65 VRLNGIDYT 73
+RLN ID+
Sbjct: 62 MRLNKIDFA 70
>Os12g0577600 Protein of unknown function DUF1336 domain containing protein
Length = 565
Score = 99.8 bits (247), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 55/71 (77%)
Query: 10 GDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVRLNG 69
G NYFE+D+D+HRFS+ISRKG E F +RLK ++D+GLTIQ K EELPE +LCCVRLN
Sbjct: 488 GPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVIDLGLTIQAQKQEELPENVLCCVRLNR 547
Query: 70 IDYTQYKPLMT 80
+D+ + + T
Sbjct: 548 VDFVDHGQIPT 558
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.144 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,702,747
Number of extensions: 89588
Number of successful extensions: 194
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 4
Length of query: 83
Length of database: 17,035,801
Length adjustment: 53
Effective length of query: 30
Effective length of database: 14,268,459
Effective search space: 428053770
Effective search space used: 428053770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)