BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0679100 Os03g0679100|J075014H18
         (58 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0679100  Vacuolar protein sorting-associated protein 26...   118   1e-27
Os11g0629200  Similar to Vacuolar sorting protein-like            108   1e-24
Os12g0500700  Similar to Vacuolar sorting protein-like             93   4e-20

>Os03g0679100 Vacuolar protein sorting-associated protein 26 family protein
          Length = 58

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/58 (100%), Positives = 58/58 (100%)

Query: 1  MVLAFQSLETIAGEVSIAPIPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLGSSLK 58
          MVLAFQSLETIAGEVSIAPIPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLGSSLK
Sbjct: 1  MVLAFQSLETIAGEVSIAPIPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLGSSLK 58



>Os11g0629200 Similar to Vacuolar sorting protein-like
          Length = 304

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 54/58 (93%)

Query: 1  MVLAFQSLETIAGEVSIAPIPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLGSSLK 58
          MV AFQSLETIAGEVS+AP+PGKRVEHQGVKIELLGQIELYHERGHFYDFTSL   L+
Sbjct: 38 MVPAFQSLETIAGEVSVAPVPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLVRELE 95



>Os12g0500700 Similar to Vacuolar sorting protein-like
          Length = 306

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 48/57 (84%)

Query: 1  MVLAFQSLETIAGEVSIAPIPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLGSSL 57
          MV  FQSLETI+GEVS+ P+PGKR+EH GVKIELLGQIELY ERG FYDFTSL   L
Sbjct: 38 MVPVFQSLETISGEVSVVPVPGKRIEHLGVKIELLGQIELYLERGKFYDFTSLVREL 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,774,607
Number of extensions: 49854
Number of successful extensions: 112
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 3
Length of query: 58
Length of database: 17,035,801
Length adjustment: 31
Effective length of query: 27
Effective length of database: 15,417,167
Effective search space: 416263509
Effective search space used: 416263509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)