Os03g0679100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0679100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Vacuolar protein sorting-associated protein 26 family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.53	(0.0261)	R²	:	0.264
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	0.632	(0.0633)	R²_dC	:	0.167	R²_C	:	0.11
β₃	:	1.13	(0.118)	R²_dE	:	0.157	R²_E	:	0.0925
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0951	(0.0556)	R²_dN8	:	0.00631	R²_N8	:	-0.00509
σ	:	0.488
deviance	:	109.93
__

_____

C
peak time of C	:	22.8
E
wheather	:	humidity
threshold	:	-21.21
memory length	:	2705
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
106.84	0.486	3.53	0.00748	0.617	1	-0.561	1	0.0814	22.9	-38.54	2716	--	--
107.81	0.484	3.52	0.11	0.625	1.12	-0.632	--	0.105	22.9	-18.67	2705	--	--
107.95	0.484	3.54	0.00444	0.671	1.02	--	1.32	0.0694	22.8	-33.98	2603	--	--
109.44	0.487	3.52	0.137	0.631	1.13	--	--	0.11	22.8	-18.14	2705	--	--
127.38	0.526	3.51	0.077	--	1.05	--	0.669	0.116	--	-15.56	2981	--	--
129.39	0.533	3.54	0.106	0.528	--	-0.695	--	0.0164	22.6	--	--	--	--
131.28	0.537	3.54	0.135	0.536	--	--	--	0.0195	22.3	--	--	--	--
127.86	0.527	3.5	0.139	--	1.12	--	--	0.135	--	-14.46	2987	--	--
109.93	0.488	3.53	--	0.632	1.13	--	--	0.0951	22.8	-21.21	2705	--	--
148.75	0.57	3.53	0.143	--	--	--	--	0.0208	--	--	--	--	--
131.76	0.537	3.55	--	0.537	--	--	--	0.00442	22.3	--	--	--	--
128.37	0.528	3.51	--	--	1.12	--	--	0.12	--	-10.32	2990	--	--
149.29	0.57	3.53	--	--	--	--	--	0.00492	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	102.38	humidity	90.0	1440	> th	dose dependent	rect.	7	8
3	102.53	precipitation	0.1	4320	< th	dose independent	rect.	4	3
4	102.53	precipitation	0.1	4320	< th	dose dependent	rect.	4	3
5	102.61	humidity	90.0	1440	> th	dose dependent	rect.	7	2
6	102.63	humidity	90.0	1440	> th	dose dependent	rect.	7	5
17	103.24	precipitation	0.1	4320	> th	dose dependent	rect.	4	3
18	103.42	precipitation	0.1	4320	> th	dose independent	rect.	4	3
28	104.33	radiation	1.0	4320	< th	dose independent	rect.	7	3
29	104.38	radiation	1.0	4320	> th	dose independent	rect.	7	3
31	104.47	humidity	80.0	14400	> th	dose independent	rect.	10	1
33	104.52	humidity	80.0	14400	> th	dose dependent	rect.	9	1
44	105.00	humidity	80.0	14400	< th	dose independent	rect.	10	1
48	105.05	humidity	90.0	14400	> th	dose independent	rect.	19	2
49	105.07	radiation	1.0	4320	< th	dose dependent	rect.	7	3
56	105.28	humidity	90.0	14400	> th	dose dependent	rect.	20	1
64	105.39	radiation	1.0	4320	< th	dose dependent	rect.	7	1
67	105.50	precipitation	0.1	1440	< th	dose independent	rect.	5	6
68	105.50	precipitation	0.1	1440	< th	dose dependent	rect.	5	6
78	105.70	humidity	80.0	14400	> th	dose independent	rect.	8	7
85	105.79	humidity	80.0	14400	> th	dose independent	rect.	9	5
90	105.85	precipitation	0.1	4320	< th	dose independent	rect.	3	14
92	105.85	precipitation	0.1	4320	< th	dose dependent	rect.	3	14
94	105.90	precipitation	0.1	1440	> th	dose independent	rect.	5	8
100	105.93	precipitation	0.1	4320	> th	dose independent	rect.	3	14
103	105.95	precipitation	0.1	1440	> th	dose independent	rect.	5	6
105	105.97	humidity	80.0	14400	> th	dose dependent	rect.	8	6
107	105.99	precipitation	0.1	4320	> th	dose dependent	rect.	3	14
108	106.01	wind	1.0	1440	> th	dose independent	rect.	12	7
109	106.03	wind	1.0	1440	< th	dose independent	rect.	9	10
132	106.24	wind	3.0	43200	< th	dose independent	rect.	5	2
136	106.25	wind	1.0	1440	> th	dose independent	rect.	10	9
139	106.28	humidity	80.0	14400	> th	dose dependent	rect.	8	11
145	106.34	humidity	80.0	14400	< th	dose independent	rect.	9	6
147	106.35	wind	3.0	43200	> th	dose independent	rect.	5	2
161	106.40	wind	1.0	1440	< th	dose independent	rect.	12	7
169	106.47	humidity	90.0	14400	> th	dose independent	rect.	7	16
180	106.50	precipitation	0.1	1440	> th	dose dependent	rect.	5	8
200	106.60	precipitation	0.1	4320	> th	dose dependent	rect.	1	16
225	106.71	humidity	90.0	14400	> th	dose independent	rect.	7	1
243	106.81	wind	1.0	4320	> th	dose independent	rect.	17	2
246	106.82	humidity	90.0	14400	< th	dose independent	rect.	7	1
251	106.84	humidity	90.0	14400	< th	dose independent	rect.	19	2
257	106.86	precipitation	0.1	4320	> th	dose dependent	rect.	16	1
260	106.89	humidity	90.0	14400	< th	dose independent	rect.	7	3
277	106.96	precipitation	0.1	14400	> th	dose independent	rect.	19	1
286	107.02	wind	3.0	14400	< th	dose independent	rect.	3	1
291	107.05	precipitation	0.1	14400	> th	dose dependent	rect.	19	1
318	107.13	precipitation	0.1	4320	< th	dose independent	rect.	1	19
319	107.13	precipitation	0.1	4320	< th	dose dependent	rect.	1	19
320	107.14	precipitation	0.1	14400	< th	dose independent	rect.	19	1
324	107.14	precipitation	0.1	14400	< th	dose dependent	rect.	19	1
325	107.15	wind	3.0	14400	> th	dose independent	rect.	3	1
339	107.19	precipitation	0.1	4320	> th	dose independent	rect.	1	19
364	107.26	precipitation	0.1	1440	> th	dose independent	rect.	7	4
368	107.26	precipitation	0.1	1440	> th	dose dependent	rect.	7	4
379	107.28	humidity	90.0	14400	< th	dose independent	rect.	7	16
410	107.36	wind	3.0	43200	< th	dose independent	rect.	1	6
417	107.41	humidity	80.0	14400	> th	dose independent	rect.	13	1
421	107.41	wind	1.0	1440	< th	dose dependent	rect.	13	6
433	107.46	humidity	90.0	14400	> th	dose independent	sin	20	NA
440	107.50	precipitation	0.1	4320	< th	dose independent	sin	2	NA
441	107.50	precipitation	0.1	4320	> th	dose independent	rect.	16	1
443	107.50	precipitation	0.1	4320	< th	dose dependent	sin	2	NA
450	107.52	precipitation	0.1	4320	> th	dose independent	sin	2	NA
468	107.57	wind	3.0	43200	> th	dose independent	rect.	1	6
475	107.59	precipitation	0.1	4320	< th	dose independent	rect.	16	1
476	107.59	precipitation	0.1	4320	< th	dose dependent	rect.	16	1
478	107.60	humidity	80.0	14400	> th	dose dependent	sin	22	NA
479	107.61	wind	9.0	14400	< th	dose independent	rect.	5	6
489	107.63	precipitation	0.1	4320	> th	dose dependent	rect.	3	11
543	107.82	humidity	90.0	1440	> th	dose independent	rect.	7	7
562	107.85	wind	1.0	1440	< th	dose dependent	rect.	9	10
574	107.88	humidity	80.0	14400	> th	dose dependent	rect.	13	6
577	107.89	humidity	80.0	14400	< th	dose independent	rect.	13	2
587	107.94	wind	3.0	43200	< th	dose independent	rect.	23	8
589	107.94	wind	1.0	43200	> th	dose dependent	rect.	5	2
590	107.94	precipitation	0.1	4320	> th	dose dependent	rect.	14	3
594	107.95	wind	1.0	1440	< th	dose independent	rect.	9	6
618	107.99	humidity	90.0	14400	< th	dose independent	rect.	16	7
633	108.01	humidity	90.0	14400	< th	dose dependent	rect.	14	1
635	108.01	wind	5.0	14400	< th	dose dependent	rect.	3	2
659	108.06	wind	5.0	43200	< th	dose dependent	rect.	6	1
664	108.07	humidity	90.0	14400	< th	dose independent	rect.	13	10
665	108.07	precipitation	0.1	4320	< th	dose independent	rect.	3	11
669	108.07	precipitation	0.1	4320	< th	dose dependent	rect.	3	11
696	108.13	wind	3.0	43200	< th	dose independent	rect.	1	3
701	108.14	precipitation	0.1	4320	> th	dose dependent	sin	3	NA
741	108.22	precipitation	0.1	4320	> th	dose independent	rect.	3	11
782	108.29	humidity	90.0	14400	< th	dose independent	sin	22	NA
783	108.29	wind	3.0	43200	> th	dose independent	rect.	1	3
799	108.31	radiation	1.0	1440	> th	dose independent	rect.	18	17
809	108.33	radiation	1.0	1440	< th	dose independent	rect.	18	17
878	108.44	humidity	50.0	14400	> th	dose dependent	rect.	14	1
955	108.56	radiation	1.0	1440	> th	dose independent	rect.	18	14
975	108.59	humidity	90.0	1440	< th	dose independent	rect.	7	7
983	108.60	humidity	60.0	14400	> th	dose dependent	rect.	16	2