Os11g0629200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vacuolar sorting protein-like; embryogenesis protein H beta 58-like protein.
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Os11g0629200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vacuolar sorting protein-like; embryogenesis protein H beta 58-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.93 | 0.235 | 12.2 | 0.216 | 0.825 | 0.583 | -0.0821 | 0.844 | -1.07 | 23.4 | 0.8291 | 1429 | -- | -- |
| 24.8 | 0.232 | 12.2 | 0.266 | 0.843 | 0.42 | -0.0876 | -- | -1.04 | 23.4 | 2.092 | 1404 | -- | -- |
| 24.92 | 0.233 | 12.2 | 0.217 | 0.826 | 0.582 | -- | 0.861 | -1.07 | 23.4 | 0.8203 | 1413 | -- | -- |
| 24.83 | 0.232 | 12.2 | 0.274 | 0.841 | 0.427 | -- | -- | -1.05 | 23.4 | 2.09 | 1409 | -- | -- |
| 36.37 | 0.282 | 12.2 | 0.261 | -- | 0.54 | -- | -0.252 | -1.1 | -- | 0.8399 | 21982 | -- | -- |
| 28.28 | 0.249 | 12.2 | 0.215 | 0.806 | -- | -0.157 | -- | -1.11 | 23.4 | -- | -- | -- | -- |
| 28.38 | 0.249 | 12.2 | 0.221 | 0.807 | -- | -- | -- | -1.11 | 23.4 | -- | -- | -- | -- |
| 36.35 | 0.282 | 12.2 | 0.242 | -- | 0.54 | -- | -- | -1.09 | -- | 1.667 | 21950 | -- | -- |
| 26.94 | 0.242 | 12.2 | -- | 0.837 | 0.371 | -- | -- | -1.06 | 23.5 | 2.15 | 1409 | -- | -- |
| 69.17 | 0.389 | 12.2 | 0.242 | -- | -- | -- | -- | -1.11 | -- | -- | -- | -- | -- |
| 29.67 | 0.255 | 12.2 | -- | 0.809 | -- | -- | -- | -1.14 | 23.4 | -- | -- | -- | -- |
| 35.38 | 0.277 | 12.2 | -- | -- | 0.566 | -- | -- | -1.09 | -- | 4.86 | 14 | -- | -- |
| 70.72 | 0.393 | 12.2 | -- | -- | -- | -- | -- | -1.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.79 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 3 | 21.89 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 4 | 21.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 45 | 23.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 58 | 23.62 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 74 | 24.06 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 79 | 24.11 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 81 | 24.13 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 86 | 24.21 | humidity | 50.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 92 | 24.25 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 94 | 24.25 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 96 | 24.25 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 132 | 24.25 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 148 | 24.25 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 150 | 24.25 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 152 | 24.25 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 207 | 24.29 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 210 | 24.32 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 212 | 24.33 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 216 | 24.35 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 219 | 24.37 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 228 | 24.42 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 232 | 24.42 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 240 | 24.44 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 241 | 24.44 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 242 | 24.45 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 249 | 24.48 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 252 | 24.49 | humidity | 90.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 265 | 24.53 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 270 | 24.56 | radiation | 1.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 274 | 24.56 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 281 | 24.58 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 282 | 24.58 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 299 | 24.60 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 308 | 24.61 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 354 | 24.65 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 400 | 24.66 | temperature | 15.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 410 | 24.67 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 413 | 24.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 420 | 24.67 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 469 | 24.72 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 476 | 24.73 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 483 | 24.73 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 487 | 24.73 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 508 | 24.74 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 509 | 24.74 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 539 | 24.76 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 603 | 24.81 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 607 | 24.81 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 609 | 24.82 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 12 |
| 625 | 24.83 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 658 | 24.85 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 690 | 24.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 705 | 24.89 | humidity | 60.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 721 | 24.91 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 743 | 24.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 763 | 24.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 780 | 24.95 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 792 | 24.95 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 842 | 24.99 | humidity | 50.0 | 10 | > th | dose dependent | no | NA | NA |
| 872 | 25.00 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 24 | 14 |
| 875 | 25.01 | wind | 5.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 897 | 25.01 | radiation | 40.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 908 | 25.02 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 948 | 25.02 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 956 | 25.03 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 991 | 25.03 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 995 | 25.04 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 6 |