BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0665200 Os03g0665200|AK066202
(302 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0665200 Protein of unknown function DUF581 family protein 503 e-143
Os10g0422600 Protein of unknown function DUF581 family protein 125 4e-29
Os07g0175300 Conserved hypothetical protein 92 7e-19
Os01g0593200 Protein of unknown function DUF581 family protein 83 2e-16
Os01g0719000 Protein of unknown function DUF581 family protein 76 3e-14
>Os03g0665200 Protein of unknown function DUF581 family protein
Length = 302
Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/302 (84%), Positives = 254/302 (84%)
Query: 1 MLRNRSRRSVGAKQGGVTAMAQXXXXXXXXXXXXXXXXXXXXXXXXXXFMALPHPPQAGF 60
MLRNRSRRSVGAKQGGVTAMAQ FMALPHPPQAGF
Sbjct: 1 MLRNRSRRSVGAKQGGVTAMAQPEPPPPSSQSSSSSSSSSPVFPSPRPFMALPHPPQAGF 60
Query: 61 LDGAAEGPSSSMSPTSILETKQFCCSSAMPPFLSERSLRKAHVEMAAAPPEPAGVGLADV 120
LDGAAEGPSSSMSPTSILETKQFCCSSAMPPFLSERSLRKAHVEMAAAPPEPAGVGLADV
Sbjct: 61 LDGAAEGPSSSMSPTSILETKQFCCSSAMPPFLSERSLRKAHVEMAAAPPEPAGVGLADV 120
Query: 121 LREHHXXXXXXXXXXXXXSQLRIQVPTGRAVELVSSPIEFGVKNRDAHLAAMSPARRFLP 180
LREHH SQLRIQVPTGRAVELVSSPIEFGVKNRDAHLAAMSPARRFLP
Sbjct: 121 LREHHGGGKAGGGKVVFGSQLRIQVPTGRAVELVSSPIEFGVKNRDAHLAAMSPARRFLP 180
Query: 181 EVVSSPSARVFAAAVVSPGEMAMSEDYTCVISRGPNPRTTHIFDDCIVESCGDVLVEKVA 240
EVVSSPSARVFAAAVVSPGEMAMSEDYTCVISRGPNPRTTHIFDDCIVESCGDVLVEKVA
Sbjct: 181 EVVSSPSARVFAAAVVSPGEMAMSEDYTCVISRGPNPRTTHIFDDCIVESCGDVLVEKVA 240
Query: 241 XXXXXXXXXAVRTNGFLNSCYACNKQLGHGNDIFIYRGDKAFCSSECRYQEMLFDEAVDN 300
AVRTNGFLNSCYACNKQLGHGNDIFIYRGDKAFCSSECRYQEMLFDEAVDN
Sbjct: 241 GGGGDGDGDAVRTNGFLNSCYACNKQLGHGNDIFIYRGDKAFCSSECRYQEMLFDEAVDN 300
Query: 301 LR 302
LR
Sbjct: 301 LR 302
>Os10g0422600 Protein of unknown function DUF581 family protein
Length = 345
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 90/166 (54%), Gaps = 24/166 (14%)
Query: 140 QLRIQVPTGRAVELVSSPIEFGVKNRDAHLAAMSPARRFLPEVVSSPSARVFAAAVVSPG 199
Q+R++V T + EFGVK+ A + P RR +SP
Sbjct: 200 QIRLRVQT----NYYAPCTEFGVKSGGAAVQYAPPPRRRW----------------MSPR 239
Query: 200 EM--AMSEDYTCVISRGPNPRTTHIFDDCIVESCGD--VLVEKVAXXXXXXXXXAVRTNG 255
EM MSEDYTCVI+RG NPRTTHIFD+ +VES GD ++
Sbjct: 240 EMMEEMSEDYTCVIARGANPRTTHIFDNRVVESSGDGEYFPPELWPPSAAGKGDDDGDGD 299
Query: 256 FLNSCYACNKQLGHGNDIFIYRGDKAFCSSECRYQEMLFDEAVDNL 301
FL C+ C+K LG G DIF+YRG+KAFCS ECRY EMLFDE ++ L
Sbjct: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIEEL 345
>Os07g0175300 Conserved hypothetical protein
Length = 205
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 18/100 (18%)
Query: 140 QLRIQVPTGRAV---------ELVSSPIEFGVKNRDAHLAAMSPARRFLPEVVSSPSARV 190
+LR+Q+P R + SSPIEFGVKNRDA LA +SP +R SP +
Sbjct: 100 RLRVQLPQERVLAGGGGGEMPPPPSSPIEFGVKNRDAQLALLSPVQR-------SPLSS- 151
Query: 191 FAAAVVSPGEMAMSEDYTCVISRGPNPRTTHIFDDCIVES 230
AAA + GE ++EDYTCVI+RGPNP+ THIFDD +VES
Sbjct: 152 -AAARTAQGEAELAEDYTCVIARGPNPKMTHIFDDLVVES 190
>Os01g0593200 Protein of unknown function DUF581 family protein
Length = 260
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 191 FAAAVVSPGEMAMSEDYTCVISRGPNPRTTHIFDDCIVESCGDVLVEKVAXXXXXXXXXA 250
+ +S ++ SEDYT V+ RGPNPRTTH F D ++E G+ L+ +
Sbjct: 131 LKGSFMSLDDIVNSEDYTRVVCRGPNPRTTHFFGDHVLEFEGEQLMPDESKSEESLPPRL 190
Query: 251 VRTNGFLNSCYACNKQLGHGNDIFIYRGDKAFCSSECRYQEM 292
G ++ CY C ++L G DI++Y+GDKAFCS ECR M
Sbjct: 191 --EEGMMSFCYFCGEKLEEGKDIYVYQGDKAFCSMECRENFM 230
>Os01g0719000 Protein of unknown function DUF581 family protein
Length = 262
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 18/122 (14%)
Query: 179 LPEVVSSPSARVFAAAVVSPGEMA---MSEDYTCVISRGPNPRTTHIFDDCIVESCGDV- 234
LP+ S + + + V+ E+A +SE+YTCVI GPNPRTTHI D +E C V
Sbjct: 119 LPKAASDAAMQKNGSGSVTLDEIADFALSEEYTCVIEHGPNPRTTHILGDETLEVCKGVP 178
Query: 235 --------LVEKVAXXXXXXXXXAVRTNGFLNSCYACNKQLGHGNDIFIYRGDKAFCSSE 286
+E + R SC C K+L DI++Y G+KAFCS+E
Sbjct: 179 RSSKKSIFTIEPIGELPSTLACAVSR------SCCYCRKRLQQDRDIYMYLGEKAFCSNE 232
Query: 287 CR 288
CR
Sbjct: 233 CR 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,469,952
Number of extensions: 367150
Number of successful extensions: 1030
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1026
Number of HSP's successfully gapped: 6
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)