FiT-DB / Search/ Help/ Sample detail

Os01g0719000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF581 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.39 (0.0377) R2 : 0.707
β1 : -2.38 (0.138) R2dD : 0.198 R2D : 0.0655
β2 : 2.83 (0.113) R2dC : 0.533 R2C : 0.277
β3 : -1.1 (0.135) R2dE : 0.0558 R2E : -0.166
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.43 (0.0807) R2dN8 : 0.27 R2N8 : 0.103
σ : 0.705
deviance : 229.16
__
_____
C
peak time of C : 6.11
E
wheather : humidity
threshold : 80.51
memory length : 800
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.26 0.694 7.41 -2.57 2.77 -1.15 -0.499 2.47 -1.47 6.15 80.98 841 -- --
229.06 0.705 7.39 -2.38 2.83 -1.11 0.18 -- -1.43 6.12 80.32 800 -- --
218.67 0.689 7.41 -2.56 2.7 -1.16 -- 2.48 -1.48 6.17 81 882 -- --
229.16 0.705 7.39 -2.38 2.83 -1.1 -- -- -1.43 6.11 80.51 800 -- --
500.8 1.04 7.46 -2.44 -- -1.71 -- 2.91 -1.54 -- 80.99 1277 -- --
252.6 0.745 7.4 -2.33 2.42 -- -0.355 -- -1.38 5.47 -- -- -- --
252.9 0.745 7.4 -2.33 2.41 -- -- -- -1.38 5.49 -- -- -- --
498.83 1.04 7.43 -2.19 -- 0.734 -- -- -1.3 -- 74 1289 -- --
369.63 0.895 7.36 -- 2.27 -1.3 -- -- -1.22 5.72 84.26 1324 -- --
556.11 1.1 7.43 -2.25 -- -- -- -- -1.32 -- -- -- -- --
395.88 0.931 7.34 -- 2.38 -- -- -- -1.12 5.53 -- -- -- --
624.69 1.17 7.37 -- -- 0.78 -- -- -1.05 -- 74 1289 -- --
689.57 1.23 7.38 -- -- -- -- -- -1.07 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.49 radiation 40.0 90 < th dose dependent rect. 13 14
11 208.31 radiation 20.0 90 < th dose independent rect. 13 14
13 209.70 radiation 40.0 90 < th dose dependent rect. 15 12
22 210.97 wind 9.0 90 < th dose dependent rect. 16 11
33 212.41 radiation 20.0 90 < th dose independent rect. 15 12
76 214.92 radiation 20.0 30 < th dose dependent rect. 6 21
77 214.97 humidity 80.0 720 > th dose independent rect. 19 21
89 215.60 temperature 25.0 90 < th dose independent rect. 3 4
91 215.74 humidity 80.0 720 < th dose independent rect. 18 4
97 216.08 humidity 80.0 720 < th dose independent rect. 18 7
98 216.11 humidity 80.0 720 < th dose dependent rect. 19 6
104 216.23 humidity 80.0 720 > th dose independent rect. 19 7
115 216.51 humidity 80.0 720 < th dose independent rect. 18 21
148 217.48 humidity 80.0 720 < th dose dependent rect. 20 2
171 218.13 humidity 80.0 720 < th dose independent rect. 20 1
172 218.14 humidity 80.0 10 > th dose dependent rect. 13 14
174 218.16 wind 3.0 90 < th dose independent rect. 23 4
186 218.41 precipitation 0.1 90 < th dose independent rect. 3 14
187 218.41 precipitation 0.1 90 < th dose dependent rect. 3 14
194 218.47 temperature 20.0 270 > th dose independent rect. 15 10
196 218.49 humidity 80.0 720 > th dose independent rect. 12 22
198 218.54 temperature 25.0 90 < th dose independent rect. 3 6
200 218.54 wind 9.0 10 < th dose dependent rect. 6 22
204 218.61 temperature 25.0 90 < th dose independent rect. 3 8
229 218.87 wind 5.0 90 < th dose independent rect. 16 11
232 218.90 humidity 80.0 720 < th dose independent rect. 11 18
240 218.95 humidity 80.0 720 < th dose independent sin 15 NA
247 219.05 humidity 80.0 720 > th dose independent rect. 4 23
255 219.11 wind 3.0 90 < th dose independent rect. 21 6
259 219.16 temperature 20.0 270 > th dose independent rect. 21 4
269 219.32 wind 5.0 90 < th dose dependent rect. 23 4
277 219.39 humidity 80.0 720 < th dose independent rect. 9 21
308 219.56 humidity 80.0 10 > th dose dependent rect. 10 17
330 219.71 humidity 80.0 720 > th dose independent sin 11 NA
334 219.73 wind 9.0 90 < th dose independent rect. 16 11
341 219.79 radiation 1.0 720 > th dose independent rect. 6 11
346 219.82 wind 5.0 90 < th dose dependent rect. 21 6
348 219.84 temperature 25.0 270 < th dose independent rect. 21 9
349 219.85 humidity 80.0 720 > th dose independent no NA NA
352 219.88 wind 3.0 10 < th dose independent rect. 16 11
358 219.93 radiation 10.0 30 < th dose independent rect. 6 21
366 220.00 temperature 10.0 90 > th dose independent rect. 16 11
367 220.00 radiation 40.0 90 < th dose independent rect. 16 11
368 220.00 temperature 10.0 90 > th dose independent rect. 3 13
369 220.00 atmosphere 1015.0 90 < th dose independent rect. 3 13
370 220.00 humidity 80.0 720 > th dose independent rect. 17 17
377 220.02 humidity 80.0 10 > th dose dependent rect. 8 19
382 220.04 humidity 80.0 720 > th dose independent rect. 23 23
387 220.06 humidity 80.0 720 > th dose independent rect. 12 15
392 220.12 wind 9.0 90 < th dose independent rect. 3 13
414 220.24 temperature 20.0 90 > th dose independent rect. 6 21
431 220.39 wind 9.0 90 < th dose dependent rect. 6 21
433 220.41 radiation 40.0 720 < th dose independent rect. 13 5
435 220.42 precipitation 0.1 90 < th dose independent rect. 17 10
438 220.42 humidity 80.0 720 < th dose independent rect. 11 23
439 220.42 precipitation 0.1 90 < th dose dependent rect. 17 10
446 220.46 humidity 80.0 10 > th dose dependent rect. 6 21
447 220.47 humidity 80.0 720 > th dose independent rect. 19 14
449 220.47 humidity 80.0 90 > th dose dependent rect. 6 21
494 220.73 humidity 80.0 90 > th dose dependent rect. 15 12
496 220.77 humidity 80.0 90 > th dose independent rect. 23 4
513 220.85 radiation 40.0 90 < th dose dependent rect. 3 9
522 220.89 atmosphere 995.0 90 > th dose independent rect. 3 13
527 220.91 radiation 30.0 720 < th dose independent rect. 15 2
534 220.94 wind 3.0 10 < th dose independent rect. 13 14
546 221.00 humidity 70.0 90 > th dose dependent rect. 21 6
559 221.05 atmosphere 995.0 90 > th dose independent rect. 17 10
593 221.22 humidity 70.0 90 > th dose dependent rect. 23 4
594 221.23 humidity 80.0 720 < th dose independent no NA NA
595 221.23 humidity 80.0 720 > th dose independent rect. 8 23
605 221.26 temperature 20.0 90 > th dose independent rect. 23 4
609 221.29 humidity 80.0 720 < th dose independent rect. 23 23
611 221.30 humidity 80.0 720 < th dose independent rect. 3 23
629 221.36 humidity 80.0 720 > th dose independent rect. 2 23
635 221.39 temperature 20.0 90 > th dose independent rect. 21 6
646 221.43 humidity 80.0 720 < th dose independent rect. 1 23
650 221.44 humidity 50.0 90 > th dose independent rect. 17 10
652 221.46 radiation 30.0 720 < th dose independent rect. 15 10
696 221.68 wind 3.0 10 < th dose independent rect. 21 6
737 221.87 temperature 20.0 270 > th dose independent rect. 23 1
745 221.90 humidity 80.0 90 > th dose independent rect. 21 6
794 222.17 wind 3.0 270 < th dose independent rect. 23 1
822 222.33 atmosphere 1015.0 90 < th dose dependent rect. 3 3
850 222.51 humidity 50.0 10 > th dose dependent rect. 17 10
857 222.54 wind 3.0 10 < th dose independent rect. 6 21
910 222.78 atmosphere 1015.0 10 < th dose dependent rect. 4 2
935 222.90 temperature 20.0 270 > th dose independent rect. 6 19
960 223.03 temperature 10.0 90 > th dose dependent rect. 23 4
963 223.05 temperature 10.0 90 > th dose dependent rect. 21 6
964 223.06 temperature 25.0 270 < th dose independent rect. 1 5
981 223.18 temperature 10.0 720 > th dose independent rect. 3 10
982 223.18 atmosphere 995.0 720 > th dose independent rect. 3 10
984 223.18 temperature 10.0 720 > th dose independent rect. 13 14
997 223.23 humidity 80.0 720 > th dose independent rect. 5 11