BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0719000 Os01g0719000|AK073213
(262 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268 87 7e-18
AT5G11460.1 | chr5:3657064-3658388 REVERSE LENGTH=345 87 9e-18
AT2G25690.1 | chr2:10940530-10941649 REVERSE LENGTH=325 71 7e-13
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 67 9e-12
AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223 54 1e-07
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 52 3e-07
AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216 50 1e-06
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 49 3e-06
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 48 6e-06
AT1G79970.1 | chr1:30082773-30083592 FORWARD LENGTH=241 48 6e-06
>AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268
Length = 267
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 114/256 (44%), Gaps = 36/256 (14%)
Query: 1 MEESNDQGLAQKSTAPTGFFRVPGLFVRLSSKGLNAVDPDSAWSPTSPLDFXXXXXXXXX 60
M E+N Q QK + T F P LF SS + + D+ SPTS LD
Sbjct: 13 MAETN-QSQNQKQSKTTPF---PRLFTAFSSFK-SFTENDAVASPTSILD--TKPFSVLK 65
Query: 61 XXXXXXXXXGVEADQKFRTNPPRVGLGLVDALTADESSSCLGVTSSFL----------DS 110
E + + + P R+GL +VD+L DE+ + + L DS
Sbjct: 66 NPFGSDNPKTQEPETRLKLEPKRIGLAIVDSLIQDETPEPGPRSGTILFGSQLRIRVPDS 125
Query: 111 IRPFLELGLPKAASDAAMQKNGS----GSVTLDE----IADFALSEEYTCVIEHGPNPRT 162
+ G+ S +K GS GS + +D LSE+YTCV HGPNPRT
Sbjct: 126 PISSSDFGIKTRNSQPETKKPGSESGLGSPRIISGYFPASDMELSEDYTCVTCHGPNPRT 185
Query: 163 THILGDETLEVCKGVPRSSKKSIF--TIEPIGELPSTLACAVS--RSCCYCRKRLQQDRD 218
HI + +E GV +F + +P+ E S + S CC C+K L D
Sbjct: 186 IHIFDNCIVESQPGV-------VFFRSSDPVNESDSDYSPPDSFLSCCCNCKKSLGPRDD 238
Query: 219 IYMYLGEKAFCSNECR 234
I+MY G++AFCS+ECR
Sbjct: 239 IFMYRGDRAFCSSECR 254
>AT5G11460.1 | chr5:3657064-3658388 REVERSE LENGTH=345
Length = 344
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 126/299 (42%), Gaps = 78/299 (26%)
Query: 11 QKSTAPTGFFRVPGLFVRLSSKGLNAV-------DPDSAWSPTSPLDFXXXXXXXXXXXX 63
Q +TA + P L S K +++V D +SAWSPTSPLDF
Sbjct: 8 QMTTASDYYSTKPVLSAIRSHKLISSVFEGKCPSDYESAWSPTSPLDFRLFSTLGNPFAA 67
Query: 64 XXXXXXGVEADQKFRTNPPRVGLGLVDALTAD---ESSSCLGVTSSFLDSI--------- 111
+ + + +VGL +V +L D +SS+ + + S +I
Sbjct: 68 SSSRSIWRGKQRSWDSG--KVGLSIVHSLVDDHHTDSSATIVLPSPDSKNIIFGSLMRSG 125
Query: 112 -------RPFLELGLPK-----------------------AASDAA-------------- 127
+PF + +PK + DAA
Sbjct: 126 QKPHLLSQPFTKALMPKDVIPNAVFEIGHDVIDVLELRKSGSVDAAYCSGAENFSVNNNA 185
Query: 128 --MQKNGSGSVTLDEIADFALSEEYTCVIEHGPNPRTTHILGDETLEVCKGVP------R 179
+ K GS+ +D +SE+YTCVI HGPNP+TTH GD+ +E + +
Sbjct: 186 CQVTKQDPGSLNGGTESDMEISEDYTCVISHGPNPKTTHFYGDQVMESVEREELKNRCCK 245
Query: 180 SSKKSIFTIEPIGELPSTLACAVSR---SCCY-CRKRLQQDRDIYMYLGEKAFCSNECR 234
+ K+SIF + P+ +L + + + S CY C K+L DIYMY G KAFCS+ECR
Sbjct: 246 NEKESIFAVAPL-DLTTPVDVLPPKDFLSFCYGCSKKLGMGEDIYMYSGYKAFCSSECR 303
>AT2G25690.1 | chr2:10940530-10941649 REVERSE LENGTH=325
Length = 324
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 148 EEYTCVIEHGPNPRTTHILGDETLEVCKGVPRSSKKSIFTIEPIGEL-PSTLACAVSRSC 206
E+YTC+I HGPNP+TTHI GD LE K + + + E G + PS + C
Sbjct: 218 EDYTCIIAHGPNPKTTHIYGDRVLECHKNELKGDEDN---KEKFGSVFPSDNFLGI---C 271
Query: 207 CYCRKRLQQDRDIYMYLGEKAFCSNECR 234
+C K+L DIYMY EK+FCS ECR
Sbjct: 272 NFCNKKLGGGDDIYMY-REKSFCSEECR 298
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 141 IADFALSEEYTCVIEHGPNPRTTHILGDETLEVCKGVPRSSKKSIFTIEPIGELPSTLAC 200
+++ +E+YT VI HGPNP THI + ++ S+ +P E ST +
Sbjct: 167 VSEIDQTEDYTRVISHGPNPTITHIFDNSVFV------EATPCSVPLPQPAMETKSTES- 219
Query: 201 AVSRSCCYCRKRLQQDRDIYMYLGEKAFCSNECR 234
+SR C C+K L Q +DIY+Y GEK FCS+ECR
Sbjct: 220 FLSR-CFTCKKNLDQKQDIYIYRGEKGFCSSECR 252
>AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223
Length = 222
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 148 EEYTCVIEHGPNPRTTHILGDETLEVCKGVPRSSKKSIFTIE--PIGELPSTLA-CAVSR 204
EEYT V PN T D+ E+ + R K + T++ P+ E S
Sbjct: 95 EEYTYVT--SPNGPTKVYYNDDGFELSENDYRRVHKPMVTVDEPPVIERQSVRGPTEFLS 152
Query: 205 SCCYCRKRLQQDRDIYMYLGEKAFCSNECR 234
SCC C+K+LQ +DIYMY GE FCS ECR
Sbjct: 153 SCCLCKKKLQ-GKDIYMYKGEMGFCSAECR 181
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 17/161 (10%)
Query: 84 VGLGLVDALTADESSSCLGVTSSFLDSIRPFLELGLPKAASDAAMQKNGSGSVTLDEIAD 143
VGLG+V AL + V S E P + +G + DE
Sbjct: 66 VGLGIVAALENSNTRRITSVCRS---------EPNQPGRSDPVQFMSHGGSTDGEDEEMF 116
Query: 144 FALSEEYTCVI-EHGPNPR-TTHILGDETLE-VCKGVPRSSKKSIFTIEPIGELPST--- 197
E+YT V HGP+ T + + E + ++ +F ++ + E P
Sbjct: 117 IMDEEDYTLVTCHHGPSGSCNTRVYDKDGFECFSSKINDDRRERLFVVDVVTESPENSPE 176
Query: 198 -LACAVSRSCCYCRKRLQQDRDIYMYLGEKAFCSNECRRDY 237
SC CRK+L +DI++Y GEKAFCS ECR +
Sbjct: 177 FQGLGFLNSCYLCRKKLH-GQDIFIYRGEKAFCSTECRSSH 216
>AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216
Length = 215
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 64/157 (40%), Gaps = 24/157 (15%)
Query: 84 VGLGLVDALTADESSSCLGVTSSFLDSIRPFLELGLPKAASDAAMQKNGSGSVTLDEIAD 143
+GLG+V AL E SS I P G D A S D
Sbjct: 43 IGLGIVAAL---EKSSI---------GINPVCHTGAGSKGFDLARY---SKRFQFAAGID 87
Query: 144 FALSEEYTCVIEHGPNPRTTHILGDETLEVCKGVPRSSKKSIFTIEPIGELPSTLACAVS 203
+ SEEYTCV + T +E E + ++ IE E P+ +
Sbjct: 88 LSDSEEYTCVTTR--DGLTKVYYKEEEFEFGHNLLNGDQRWRKPIEIAEESPAKERRVLR 145
Query: 204 ------RSCCYCRKRLQQDRDIYMYLGEKAFCSNECR 234
SCC C+K+LQ +DIYMY G++ FCS ECR
Sbjct: 146 DCPDFLTSCCLCKKKLQ-GKDIYMYKGDEGFCSKECR 181
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 204 RSCCYCRKRLQQDRDIYMYLGEKAFCSNECRRD 236
RSC C + L RDIYMY G+KAFCS+ECR++
Sbjct: 91 RSCALCERLLVPGRDIYMYRGDKAFCSSECRQE 123
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 205 SCCYCRKRLQQDRDIYMYLGEKAFCSNECRRD 236
SC CRK L + DI+MY G+KAFCSNECR +
Sbjct: 19 SCSLCRKHLGLNSDIFMYRGDKAFCSNECREE 50
>AT1G79970.1 | chr1:30082773-30083592 FORWARD LENGTH=241
Length = 240
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 143 DFALSEEYTCVIEHGPNPRTTHILGDETLE 172
+ ALSE+YTC+I HGPNP+TT+I GD L+
Sbjct: 149 EMALSEDYTCIISHGPNPKTTYIFGDCILD 178
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,131,816
Number of extensions: 197367
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 10
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)