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Os03g0665200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF581 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.73 (0.0395) R2 : 0.765
β1 : -0.7 (0.177) R2dD : 0.0213 R2D : -0.0997
β2 : 1.83 (0.077) R2dC : 0.296 R2C : 0.169
β3 : 2.85 (0.271) R2dE : 0.247 R2E : -0.381
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15 (0.645) R2dD*E : 0.851 R2D*E : 0.108
γ1 : 0.138 (0.0735) R2dN8 : 0.00312 R2N8 : -0.153
σ : 0.568
deviance : 148.6
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C
peak time of C : 3.73
E
wheather : radiation
threshold : 0.9394
memory length : 5790
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 12.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.01 0.566 9.73 -0.686 1.83 2.85 1.1 15 0.14 3.74 0.938 5789 17.9 12.1
302.74 0.81 9.19 -0.415 1.87 1.51 2.1 -- 0.315 2.84 -9.77 27004 16.6 13.3
148.6 0.568 9.73 -0.7 1.83 2.85 -- 15 0.138 3.73 0.9394 5790 17.9 12.1
277.22 0.775 9.16 -0.0627 1.73 2.68 -- -- 0.341 2.94 -10.54 35671 16.6 12.7
250.43 0.737 9.65 -0.475 -- 3.07 -- 15.1 0.0941 -- -1.327 6181 18 12
336.81 0.86 9.11 -1.12 1.95 -- 1.4 -- 0.6 3.7 -- -- -- --
342.73 0.867 9.12 -1.15 1.95 -- -- -- 0.592 3.68 -- -- -- --
277.85 0.776 9.18 -0.0879 -- 3.82 -- -- 0.294 -- -9.284 9307 16.6 12.7
272.84 0.769 9.18 -- 1.73 2.57 -- -- 0.398 2.53 -11.36 34240 16.6 12.7
554.57 1.1 9.12 -1.06 -- -- -- -- 0.644 -- -- -- -- --
377.33 0.909 9.09 -- 1.93 -- -- -- 0.719 3.69 -- -- -- --
259.95 0.751 9.21 -- -- 3.83 -- -- 0.303 -- -8.178 9414 16.6 10.7
584.44 1.13 9.09 -- -- -- -- -- 0.762 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.14 radiation 1 43200 < th dose independent rect. 17 12
6 138.57 radiation 1 43200 < th dose independent rect. 17 2
23 138.88 radiation 1 43200 > th dose independent rect. 17 12
25 139.32 radiation 1 43200 > th dose independent rect. 17 2
62 141.12 radiation 1 43200 < th dose independent rect. 16 18
65 141.27 radiation 1 43200 < th dose independent sin 13 NA
83 141.47 radiation 1 14400 > th dose dependent rect. 18 12
89 141.58 radiation 1 43200 > th dose independent rect. 16 19
99 141.93 radiation 1 14400 > th dose dependent rect. 4 2
131 142.50 radiation 1 43200 > th dose independent sin 13 NA
160 143.28 radiation 1 14400 < th dose dependent rect. 5 1
171 143.55 radiation 1 14400 < th dose dependent rect. 17 18
175 143.70 wind 5 43200 > th dose independent rect. 11 1
184 143.85 radiation 1 14400 < th dose dependent rect. 24 6
199 144.02 radiation 1 14400 < th dose dependent rect. 17 14
200 144.03 wind 5 43200 < th dose independent rect. 11 1
215 144.06 radiation 1 43200 < th dose independent rect. 7 23
232 144.42 radiation 1 14400 < th dose dependent sin 11 NA
242 144.50 radiation 1 43200 < th dose independent rect. 7 12
253 144.63 radiation 40 14400 < th dose independent rect. 15 18
261 144.72 radiation 1 43200 < th dose independent rect. 24 19
269 144.74 radiation 1 43200 < th dose independent no NA NA
270 144.74 radiation 1 43200 < th dose independent rect. 2 17
276 144.74 radiation 1 43200 > th dose independent rect. 7 23
280 144.75 radiation 1 43200 < th dose independent rect. 4 15
286 144.75 radiation 1 43200 < th dose independent rect. 2 23
298 144.76 radiation 1 43200 < th dose independent rect. 4 21
305 144.76 radiation 1 43200 < th dose dependent rect. 16 3
361 145.05 radiation 1 43200 < th dose independent rect. 10 23
387 145.19 radiation 1 43200 > th dose independent rect. 7 12
402 145.25 wind 5 43200 > th dose independent rect. 10 4
409 145.30 radiation 1 43200 < th dose independent rect. 24 11
425 145.33 radiation 1 43200 > th dose independent rect. 4 7
449 145.43 radiation 1 43200 > th dose independent no NA NA
452 145.43 radiation 1 43200 > th dose independent rect. 4 15
535 145.56 radiation 40 14400 < th dose independent rect. 23 10
561 145.62 radiation 40 14400 < th dose independent rect. 7 2
566 145.65 wind 5 43200 < th dose independent rect. 10 4
576 145.71 humidity 60 43200 > th dose independent rect. 15 1
621 145.81 radiation 40 14400 < th dose independent rect. 17 16
625 145.82 radiation 1 43200 > th dose independent rect. 10 23
663 146.06 humidity 90 43200 < th dose independent rect. 20 1
689 146.19 radiation 1 14400 < th dose dependent rect. 8 22
717 146.40 radiation 1 14400 < th dose dependent rect. 5 6
718 146.41 humidity 80 43200 > th dose dependent rect. 18 2
721 146.45 humidity 60 43200 > th dose independent rect. 14 5
760 146.67 radiation 1 14400 < th dose dependent rect. 2 9
772 146.68 radiation 1 14400 < th dose dependent rect. 24 11
773 146.68 radiation 1 14400 < th dose dependent rect. 5 14
777 146.69 radiation 1 14400 < th dose dependent rect. 5 23
780 146.70 radiation 1 14400 < th dose dependent rect. 22 13
801 146.72 radiation 1 14400 < th dose dependent rect. 5 20
812 146.78 radiation 1 14400 < th dose dependent rect. 24 19
814 146.79 radiation 1 14400 < th dose dependent rect. 2 17
832 146.81 radiation 1 14400 < th dose dependent rect. 24 23
833 146.82 radiation 1 14400 < th dose dependent no NA NA
933 147.10 humidity 60 43200 > th dose independent rect. 15 3
997 147.35 humidity 60 43200 < th dose independent rect. 15 1