BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0659800 Os03g0659800|AK062366
         (132 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0659800  Conserved hypothetical protein                      237   2e-63
Os01g0768300                                                      170   2e-43
Os04g0616000  Conserved hypothetical protein                      138   1e-33
Os05g0406000  Conserved hypothetical protein                      119   6e-28

>Os03g0659800 Conserved hypothetical protein
          Length = 132

 Score =  237 bits (604), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/132 (90%), Positives = 119/132 (90%)

Query: 1   IMSTSASPRRMSTTATPKLMSGTTSPSKTRIEGYMSMTPWYPSSKQSSAANSXXXXXXXX 60
           IMSTSASPRRMSTTATPKLMSGTTSPSKTRIEGYMSMTPWYPSSKQSSAANS        
Sbjct: 1   IMSTSASPRRMSTTATPKLMSGTTSPSKTRIEGYMSMTPWYPSSKQSSAANSPPRGRPNP 60

Query: 61  XXXXXIDGKEFFRQARSRLSYEQFGAFLANIKELNAHKQSREDTLKKAEEIFGPDNKDLY 120
                IDGKEFFRQARSRLSYEQFGAFLANIKELNAHKQSREDTLKKAEEIFGPDNKDLY
Sbjct: 61  GRTPRIDGKEFFRQARSRLSYEQFGAFLANIKELNAHKQSREDTLKKAEEIFGPDNKDLY 120

Query: 121 LSFQGLLNRSLP 132
           LSFQGLLNRSLP
Sbjct: 121 LSFQGLLNRSLP 132



>Os01g0768300 
          Length = 347

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 99/129 (76%), Gaps = 3/129 (2%)

Query: 3   STSASPRRMSTTATPKLMSGTTSPSKTRIEGYMSMTPWYPSSKQSSAANSXXXXXXXXXX 62
           + + SPRR ST  +PKL +  TSP   R+EG+M+M PW PSSK SSAANS          
Sbjct: 221 TAATSPRRYSTAVSPKLAASATSP---RLEGHMAMQPWLPSSKMSSAANSPPRAHSISGR 277

Query: 63  XXXIDGKEFFRQARSRLSYEQFGAFLANIKELNAHKQSREDTLKKAEEIFGPDNKDLYLS 122
              +DGKEFFRQAR+RLSYEQF AFLANIKELNAH+QSRE+TL+KA+EIFG +NKDL++S
Sbjct: 278 TTRVDGKEFFRQARNRLSYEQFAAFLANIKELNAHRQSREETLQKADEIFGSENKDLFMS 337

Query: 123 FQGLLNRSL 131
           FQ LL+RSL
Sbjct: 338 FQSLLSRSL 346



>Os04g0616000 Conserved hypothetical protein
          Length = 312

 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 87/121 (71%)

Query: 10  RMSTTATPKLMSGTTSPSKTRIEGYMSMTPWYPSSKQSSAANSXXXXXXXXXXXXXIDGK 69
           +++  +TPK +SG TSP+K+  E + + + W+ SS    +A +             IDGK
Sbjct: 190 KLTPGSTPKFLSGPTSPTKSLSEVHSTFSSWHGSSSHQYSAPTSPPQHRSFAGRPRIDGK 249

Query: 70  EFFRQARSRLSYEQFGAFLANIKELNAHKQSREDTLKKAEEIFGPDNKDLYLSFQGLLNR 129
           EFFRQAR+RLSYEQFGAFLANIKE NA KQSREDTL KAEEIFG ++KDLY+SFQ +LNR
Sbjct: 250 EFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSKAEEIFGTEHKDLYISFQNMLNR 309

Query: 130 S 130
           +
Sbjct: 310 N 310



>Os05g0406000 Conserved hypothetical protein
          Length = 174

 Score =  119 bits (298), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 61/66 (92%)

Query: 66  IDGKEFFRQARSRLSYEQFGAFLANIKELNAHKQSREDTLKKAEEIFGPDNKDLYLSFQG 125
           +DGKEFFRQ R+RLSYEQF AFLAN+KELN+HKQ+REDTL+KA+EIFGPDNKDLY  F+G
Sbjct: 108 VDGKEFFRQVRNRLSYEQFSAFLANVKELNSHKQTREDTLRKADEIFGPDNKDLYTIFEG 167

Query: 126 LLNRSL 131
           L+ R++
Sbjct: 168 LITRNI 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.125    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,462,345
Number of extensions: 104109
Number of successful extensions: 361
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 4
Length of query: 132
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 42
Effective length of database: 12,336,541
Effective search space: 518134722
Effective search space used: 518134722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 150 (62.4 bits)