BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0646400 Os03g0646400|AK108306
         (166 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0646400  Conserved hypothetical protein                      307   2e-84
AK108338                                                          307   2e-84
Os07g0458700  Conserved hypothetical protein                      201   2e-52
Os07g0458500  Conserved hypothetical protein                      162   1e-40

>Os03g0646400 Conserved hypothetical protein
          Length = 166

 Score =  307 bits (787), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/166 (93%), Positives = 156/166 (93%)

Query: 1   MGFXXXXXXXXXXLLSLTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADP 60
           MGF          LLSLTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADP
Sbjct: 1   MGFVTAAADAVVALLSLTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADP 60

Query: 61  PPFFRGLVWLDLAFLWPVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGR 120
           PPFFRGLVWLDLAFLWPVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGR
Sbjct: 61  PPFFRGLVWLDLAFLWPVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGR 120

Query: 121 TTPKLIQLYVPFALAAVTAVLRGFCSCSAQATAVASHAPTARKKRL 166
           TTPKLIQLYVPFALAAVTAVLRGFCSCSAQATAVASHAPTARKKRL
Sbjct: 121 TTPKLIQLYVPFALAAVTAVLRGFCSCSAQATAVASHAPTARKKRL 166



>AK108338 
          Length = 166

 Score =  307 bits (787), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/166 (93%), Positives = 156/166 (93%)

Query: 1   MGFXXXXXXXXXXLLSLTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADP 60
           MGF          LLSLTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADP
Sbjct: 1   MGFVTAAADAVVALLSLTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADP 60

Query: 61  PPFFRGLVWLDLAFLWPVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGR 120
           PPFFRGLVWLDLAFLWPVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGR
Sbjct: 61  PPFFRGLVWLDLAFLWPVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGR 120

Query: 121 TTPKLIQLYVPFALAAVTAVLRGFCSCSAQATAVASHAPTARKKRL 166
           TTPKLIQLYVPFALAAVTAVLRGFCSCSAQATAVASHAPTARKKRL
Sbjct: 121 TTPKLIQLYVPFALAAVTAVLRGFCSCSAQATAVASHAPTARKKRL 166



>Os07g0458700 Conserved hypothetical protein
          Length = 166

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 121/152 (79%)

Query: 14  LLSLTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADPPPFFRGLVWLDLA 73
           L SLT+AVAAPL DAQ VLPR L+PAPLV + RW+A EFG YLVA PP F RGLVWL+LA
Sbjct: 14  LFSLTVAVAAPLIDAQSVLPRHLFPAPLVSLKRWYAREFGDYLVARPPGFLRGLVWLELA 73

Query: 74  FLWPVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGRTTPKLIQLYVPFA 133
           FLWP+ +A LYGILARR W+A TS++AGV  LT MSAI GE++GS + T KL+Q+YVPFA
Sbjct: 74  FLWPLALATLYGILARRRWAATTSLIAGVSTLTSMSAILGEIVGSKKATLKLLQMYVPFA 133

Query: 134 LAAVTAVLRGFCSCSAQATAVASHAPTARKKR 165
           + AV A+LRG CS + + TA +S  P+ARKKR
Sbjct: 134 VFAVIAILRGLCSSAPRGTAGSSLGPSARKKR 165



>Os07g0458500 Conserved hypothetical protein
          Length = 170

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 94/129 (72%)

Query: 1   MGFXXXXXXXXXXLLSLTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADP 60
           MG           L SL +A AAPL DAQ VLPR L+PAPLVG+HRW+A EFG YL A+P
Sbjct: 1   MGLLSTAADAAVVLFSLAVAAAAPLIDAQAVLPRRLFPAPLVGLHRWYATEFGDYLAAEP 60

Query: 61  PPFFRGLVWLDLAFLWPVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGR 120
           P FFRGLVWL+L   WP+ VA LYG+LARRPW+ AT++ AGV V+T MSA+ GE L SGR
Sbjct: 61  PGFFRGLVWLELLLHWPLSVATLYGVLARRPWAGATALAAGVSVVTAMSAVLGEFLVSGR 120

Query: 121 TTPKLIQLY 129
            T KL+Q++
Sbjct: 121 ATHKLLQIH 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.140    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,576,299
Number of extensions: 227988
Number of successful extensions: 519
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 152 (63.2 bits)