Os07g0458700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0458700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.5 | 0.264 | 7.39 | -2.1 | 0.308 | -274 | -0.453 | -577 | 0.313 | 2.43 | 2 | 3 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 34.01 | 0.273 | 8.81 | 0.902 | 0.287 | -- | -0.27 | -- | 0.316 | 2.74 | -- | -- | -- | -- |
| 34.27 | 0.274 | 8.81 | 0.908 | 0.286 | -- | -- | -- | 0.317 | 2.75 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 39.02 | 0.292 | 8.81 | 0.921 | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
| 56.02 | 0.35 | 8.83 | -- | 0.304 | -- | -- | -- | 0.216 | 2.78 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 61.38 | 0.366 | 8.83 | -- | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.08 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 20 | 19 |
| 3 | 30.12 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 4 | 30.14 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 7 | 30.16 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 13 | 30.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 17 | 30.36 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 25 | 30.43 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 31 | 30.45 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 37 | 30.48 | temperature | 15 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 38 | 30.48 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 60 | 30.56 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 21 |
| 62 | 30.58 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 68 | 30.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 85 | 30.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 86 | 30.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 120 | 30.75 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 9 |
| 143 | 30.84 | temperature | 15 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 163 | 30.88 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 20 | 9 |
| 170 | 30.90 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 175 | 30.91 | temperature | 15 | 4320 | < th | dose dependent | sin | 5 | NA |
| 188 | 30.95 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 22 | 10 |
| 199 | 30.97 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 216 | 31.00 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 6 |
| 219 | 31.00 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 221 | 31.00 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 232 | 31.01 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 260 | 31.05 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 305 | 31.11 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 22 | 13 |
| 324 | 31.13 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 20 |
| 336 | 31.14 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 340 | 31.15 | temperature | 15 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 374 | 31.18 | temperature | 20 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 379 | 31.19 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 20 | 19 |
| 386 | 31.19 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 11 |
| 387 | 31.19 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 24 | 11 |
| 395 | 31.20 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 16 |
| 405 | 31.21 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 445 | 31.24 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 6 |
| 450 | 31.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 455 | 31.25 | atmosphere | 1000 | 10 | > th | dose dependent | sin | 8 | NA |
| 499 | 31.28 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 503 | 31.28 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 523 | 31.29 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 535 | 31.30 | humidity | 90 | 30 | < th | dose independent | rect. | 3 | 17 |
| 621 | 31.33 | temperature | 15 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 639 | 31.33 | temperature | 15 | 1440 | < th | dose dependent | rect. | 4 | 17 |
| 646 | 31.33 | humidity | 50 | 30 | > th | dose dependent | rect. | 20 | 19 |
| 651 | 31.34 | temperature | 15 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 681 | 31.36 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 20 | 6 |
| 719 | 31.37 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 720 | 31.38 | temperature | 15 | 1440 | < th | dose independent | sin | 23 | NA |
| 721 | 31.38 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 727 | 31.38 | atmosphere | 1015 | 10 | < th | dose dependent | sin | 8 | NA |
| 746 | 31.39 | temperature | 20 | 270 | < th | dose dependent | sin | 14 | NA |
| 747 | 31.39 | temperature | 15 | 1440 | < th | dose dependent | sin | 23 | NA |
| 784 | 31.41 | humidity | 90 | 720 | > th | dose dependent | sin | 10 | NA |
| 790 | 31.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 802 | 31.42 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 838 | 31.43 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 2 | 9 |
| 861 | 31.44 | radiation | 1 | 30 | < th | dose independent | rect. | 20 | 10 |
| 862 | 31.44 | radiation | 1 | 30 | < th | dose independent | rect. | 20 | 12 |
| 869 | 31.44 | temperature | 20 | 90 | < th | dose dependent | sin | 12 | NA |
| 883 | 31.44 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 901 | 31.45 | temperature | 15 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 941 | 31.46 | temperature | 15 | 270 | > th | dose independent | sin | 12 | NA |
| 943 | 31.46 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 2 | 9 |
| 946 | 31.46 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 9 | 15 |
| 982 | 31.47 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 24 | 11 |