BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0458700 Os07g0458700|AK112061
(166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32380.1 | chr2:13746792-13747730 REVERSE LENGTH=169 159 9e-40
AT1G05210.1 | chr1:1510469-1511485 FORWARD LENGTH=169 146 4e-36
AT1G05220.1 | chr1:1511943-1512656 FORWARD LENGTH=161 126 5e-30
>AT2G32380.1 | chr2:13746792-13747730 REVERSE LENGTH=169
Length = 168
Score = 159 bits (401), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 106/168 (63%), Gaps = 2/168 (1%)
Query: 1 MGXXXXXXXXXXXLFSLTVAVAAPLIDAQSVLPRHLFPAPLVSLKRWYAREFGDYLVARP 60
MG L+ +AV APLID Q+ LP +FPA +V L RWY EFGDYLV
Sbjct: 1 MGAFCKLIDAVLFLYFALMAVIAPLIDGQTSLPGDIFPAFIVDLNRWYIDEFGDYLVKEK 60
Query: 61 PGFLRGLVWLELAFLWPLALATLYGILARRRWAATTSLIAGVSTLTSMSAILGEIVGSKK 120
P FL GLVW EL LWPL++ +Y ILA + W TTS++ G S +TSM+AILGE++GS K
Sbjct: 61 PHFLVGLVWHELLLLWPLSIVNVYAILAGKSWFGTTSMVYGASVVTSMAAILGEMIGSGK 120
Query: 121 ATLKLLQMYVPFAVFAVIAILRGLCSSAPR--GTAGSSLGPSARKKRA 166
A+ KLL MYVPF ++A+LRGL S + + G G AR+KRA
Sbjct: 121 ASEKLLMMYVPFMGVGILALLRGLLSQSNKSGGAVGKRPAILARRKRA 168
>AT1G05210.1 | chr1:1510469-1511485 FORWARD LENGTH=169
Length = 168
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 99/142 (69%)
Query: 14 LFSLTVAVAAPLIDAQSVLPRHLFPAPLVSLKRWYAREFGDYLVARPPGFLRGLVWLELA 73
++ +++A+ APLID Q+ LP ++PA L LK Y +FGDYL+ P FL GLVW EL
Sbjct: 14 VYFVSMAIIAPLIDGQTSLPSGIYPAFLTDLKSKYIADFGDYLLMEKPHFLVGLVWHELL 73
Query: 74 FLWPLALATLYGILARRRWAATTSLIAGVSTLTSMSAILGEIVGSKKATLKLLQMYVPFA 133
FLWPL++A +Y ILA + W TT L+ G S +TSM+AILG+++GS KA+ +LL MYVPF
Sbjct: 74 FLWPLSIANVYAILAGKSWFGTTCLLYGASLVTSMAAILGDMIGSGKASDRLLMMYVPFM 133
Query: 134 VFAVIAILRGLCSSAPRGTAGS 155
F ++A+LRGL + + T S
Sbjct: 134 GFGILAVLRGLVYRSTKNTGSS 155
>AT1G05220.1 | chr1:1511943-1512656 FORWARD LENGTH=161
Length = 160
Score = 126 bits (317), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Query: 19 VAVAAPLIDAQSVLPRHLFPAPLVSLKRWYAREFGDYLVARPPGFLRGLVWLELAFLWPL 78
+A+ PL++ Q + P ++P L LK WY+ EF DYL P F GLVW E+ FL PL
Sbjct: 19 MAINVPLLNGQILFP-GIYPKLLTDLKDWYSSEFNDYLFIEKPLFFVGLVWHEIIFLLPL 77
Query: 79 ALATLYGILARRRWAATTSLIAGVSTLTSMSAILGEIVGSKKATLKLLQMYVPFAVFAVI 138
++ +Y IL + W TTSL+ G S LTSM+AILG+++GS+K T KLL Y+PF A++
Sbjct: 78 SIVNIYAILTSKSWFGTTSLLYGASFLTSMAAILGDMIGSEKVTNKLLLAYLPFVGLAIL 137
Query: 139 AILRGLCSSAPR 150
A+LRGL + + +
Sbjct: 138 AMLRGLVTCSTK 149
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,975,730
Number of extensions: 105301
Number of successful extensions: 276
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)