Os03g0646400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0646400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.05 | 0.488 | 7.08 | -1.04 | 1.54 | -3.84 | 0.591 | -0.438 | -0.168 | 2.47 | 28.24 | 10 | -- | -- |
| 108.27 | 0.485 | 7.09 | -1.12 | 1.54 | -3.83 | 0.473 | -- | -0.186 | 2.47 | 28.27 | 9 | -- | -- |
| 108.91 | 0.486 | 7.09 | -1.12 | 1.52 | -3.8 | -- | 0.0429 | -0.186 | 2.42 | 28.23 | 9 | -- | -- |
| 108.91 | 0.486 | 7.09 | -1.12 | 1.52 | -3.81 | -- | -- | -0.187 | 2.43 | 28.22 | 9 | -- | -- |
| 133.69 | 0.539 | 7.07 | -0.986 | -- | -3.53 | -- | -2.48 | 0.0412 | -- | 25.21 | 2898 | -- | -- |
| 313.64 | 0.83 | 6.9 | -0.194 | 0.326 | -- | 0.349 | -- | 0.625 | 4.14 | -- | -- | -- | -- |
| 313.9 | 0.83 | 6.9 | -0.198 | 0.327 | -- | -- | -- | 0.623 | 3.7 | -- | -- | -- | -- |
| 115.52 | 0.501 | 7.04 | -1.28 | -- | -3.44 | -- | -- | -0.00294 | -- | 51.56 | 1378 | -- | -- |
| 138.36 | 0.551 | 7.04 | -- | 1.35 | -3.35 | -- | -- | 0.032 | 2.42 | 28.17 | 4 | -- | -- |
| 319.83 | 0.836 | 6.9 | -0.184 | -- | -- | -- | -- | 0.631 | -- | -- | -- | -- | -- |
| 314.93 | 0.83 | 6.9 | -- | 0.323 | -- | -- | -- | 0.645 | 3.71 | -- | -- | -- | -- |
| 152.59 | 0.575 | 6.99 | -- | -- | -2.92 | -- | -- | 0.22 | -- | 57.5 | 1340 | -- | -- |
| 320.72 | 0.836 | 6.9 | -- | -- | -- | -- | -- | 0.652 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 3 | 109.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 4 | 110.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 25 | 110.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 31 | 110.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 35 | 110.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 37 | 110.97 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 39 | 111.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 57 | 111.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 63 | 111.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 76 | 111.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 91 | 111.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 138 | 111.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 154 | 111.76 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 168 | 111.85 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 204 | 112.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 225 | 112.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 226 | 112.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 293 | 112.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 298 | 112.65 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 309 | 112.68 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 348 | 112.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 361 | 112.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 394 | 113.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 459 | 113.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 475 | 113.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 481 | 113.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 789 | 115.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |