BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0646400 Os03g0646400|AK108306
(166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32380.1 | chr2:13746792-13747730 REVERSE LENGTH=169 140 3e-34
AT1G05210.1 | chr1:1510469-1511485 FORWARD LENGTH=169 130 2e-31
AT1G05220.1 | chr1:1511943-1512656 FORWARD LENGTH=161 124 2e-29
>AT2G32380.1 | chr2:13746792-13747730 REVERSE LENGTH=169
Length = 168
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 19 MAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADPPPFFRGLVWLDLAFLWPV 78
MAV APL D Q LP ++PA +V ++RW+ EFG YLV + P F GLVW +L LWP+
Sbjct: 19 MAVIAPLIDGQTSLPGDIFPAFIVDLNRWYIDEFGDYLVKEKPHFLVGLVWHELLLLWPL 78
Query: 79 CVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGRTTPKLIQLYVPFALAAVT 138
+ N+Y ILA + W TS++ G V+T M+AI GEM+GSG+ + KL+ +YVPF +
Sbjct: 79 SIVNVYAILAGKSWFGTTSMVYGASVVTSMAAILGEMIGSGKASEKLLMMYVPFMGVGIL 138
Query: 139 AVLRGFCSCSAQATAVASHAPT--ARKKR 165
A+LRG S S ++ P AR+KR
Sbjct: 139 ALLRGLLSQSNKSGGAVGKRPAILARRKR 167
>AT1G05210.1 | chr1:1510469-1511485 FORWARD LENGTH=169
Length = 168
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 92/149 (61%)
Query: 17 LTMAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADPPPFFRGLVWLDLAFLW 76
++MA+ APL D Q LP G+YPA L + + A+FG YL+ + P F GLVW +L FLW
Sbjct: 17 VSMAIIAPLIDGQTSLPSGIYPAFLTDLKSKYIADFGDYLLMEKPHFLVGLVWHELLFLW 76
Query: 77 PVCVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGRTTPKLIQLYVPFALAA 136
P+ +AN+Y ILA + W T ++ G ++T M+AI G+M+GSG+ + +L+ +YVPF
Sbjct: 77 PLSIANVYAILAGKSWFGTTCLLYGASLVTSMAAILGDMIGSGKASDRLLMMYVPFMGFG 136
Query: 137 VTAVLRGFCSCSAQATAVASHAPTARKKR 165
+ AVLRG S + T + T +R
Sbjct: 137 ILAVLRGLVYRSTKNTGSSGKRSTIMPRR 165
>AT1G05220.1 | chr1:1511943-1512656 FORWARD LENGTH=161
Length = 160
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 6/146 (4%)
Query: 19 MAVAAPLFDAQVVLPRGLYPAPLVGIHRWFAAEFGHYLVADPPPFFRGLVWLDLAFLWPV 78
MA+ PL + Q++ P G+YP L + W+++EF YL + P FF GLVW ++ FL P+
Sbjct: 19 MAINVPLLNGQILFP-GIYPKLLTDLKDWYSSEFNDYLFIEKPLFFVGLVWHEIIFLLPL 77
Query: 79 CVANLYGILARRPWSAATSIMAGVYVLTYMSAIFGEMLGSGRTTPKLIQLYVPFALAAVT 138
+ N+Y IL + W TS++ G LT M+AI G+M+GS + T KL+ Y+PF A+
Sbjct: 78 SIVNIYAILTSKSWFGTTSLLYGASFLTSMAAILGDMIGSEKVTNKLLLAYLPFVGLAIL 137
Query: 139 AVLRGFCSCSAQATAVASHAPTARKK 164
A+LRG +CS + + V AR+K
Sbjct: 138 AMLRGLVTCSTKRSTV-----LARRK 158
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.140 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,261,111
Number of extensions: 123795
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 108 (46.2 bits)