BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0644000 Os03g0644000|AK066359
(501 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0644000 Autophagy protein Apg6 family protein 958 0.0
Os01g0681400 Similar to Autophagy protein beclin1 806 0.0
Os03g0258500 Autophagy protein Apg6 family protein 740 0.0
>Os03g0644000 Autophagy protein Apg6 family protein
Length = 501
Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/484 (95%), Positives = 460/484 (95%)
Query: 18 VDPSLPRFKCQECQRALVVVGVESFTDKLPAHAVSGMNVSSVQGSVMGASRMDNSYVVLS 77
VDPSLPRFKCQECQRALVVVGVESFTDKLPAHAVSGMNVSSVQGSVMGASRMDNSYVVLS
Sbjct: 18 VDPSLPRFKCQECQRALVVVGVESFTDKLPAHAVSGMNVSSVQGSVMGASRMDNSYVVLS 77
Query: 78 KQNRSHSHGIPPRPPSAGIPRAEPNQPTRAMEGSYIVLPPAAASIYKTSASEGGGAQLSP 137
KQNRSHSHGIPPRPPSAGIPRAEPNQPTRAMEGSYIVLPPAAASIYKTSASEGGGAQLSP
Sbjct: 78 KQNRSHSHGIPPRPPSAGIPRAEPNQPTRAMEGSYIVLPPAAASIYKTSASEGGGAQLSP 137
Query: 138 TSMNPGSPLPGNNFHSSVTVLKRAFEIATSQTQIEQPLCLDCMRLLSDKMEKEIEDVNTD 197
TSMNPGSPLPGNNFHSSVTVLKRAFEIATSQTQIEQPLCLDCMRLLSDKMEKEIEDVNTD
Sbjct: 138 TSMNPGSPLPGNNFHSSVTVLKRAFEIATSQTQIEQPLCLDCMRLLSDKMEKEIEDVNTD 197
Query: 198 NKAYEACLQRLEQETYNILSETDFXXXXXXXXXXXXXXXXXXXXXXXXYSEICSEMKCLE 257
NKAYEACLQRLEQETYNILSETDF YSEICSEMKCLE
Sbjct: 198 NKAYEACLQRLEQETYNILSETDFQKERQKIEEEEKKLKAAIEEAEKQYSEICSEMKCLE 257
Query: 258 TKSKQFEELEERYCHDLNSFQFQWISHQEERDAVLAKIEVSQVHLELLKRTNVLNDAFYI 317
TKSKQFEELEERYCHDLNSFQFQWISHQEERDAVLAKIEVSQVHLELLKRTNVLNDAFYI
Sbjct: 258 TKSKQFEELEERYCHDLNSFQFQWISHQEERDAVLAKIEVSQVHLELLKRTNVLNDAFYI 317
Query: 318 SHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFFPKFEYRIKIHPMGS 377
SHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFFPKFEYRIKIHPMGS
Sbjct: 318 SHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFFPKFEYRIKIHPMGS 377
Query: 378 YPKVTDINQNTYELFGPVNLFWSTRFDKAMTWFLTCLQEFADFAVSLDKENNVPPDKSLK 437
YPKVTDINQNTYELFGPVNLFWSTRFDKAMTWFLTCLQEFADFAVSLDKENNVPPDKSLK
Sbjct: 378 YPKVTDINQNTYELFGPVNLFWSTRFDKAMTWFLTCLQEFADFAVSLDKENNVPPDKSLK 437
Query: 438 LPYKIEGDKVGSYTIFLSFNKLDNWTKALKYMLCNLKWVLYWFIGNTSFAPPSGSLHVAQ 497
LPYKIEGDKVGSYTIFLSFNKLDNWTKALKYMLCNLKWVLYWFIGNTSFAPPSGSLHVAQ
Sbjct: 438 LPYKIEGDKVGSYTIFLSFNKLDNWTKALKYMLCNLKWVLYWFIGNTSFAPPSGSLHVAQ 497
Query: 498 SSKG 501
SSKG
Sbjct: 498 SSKG 501
>Os01g0681400 Similar to Autophagy protein beclin1
Length = 500
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/500 (79%), Positives = 429/500 (85%), Gaps = 1/500 (0%)
Query: 1 MKXXXXXXXXXGDKGGGVDPSLPRFKCQECQRALVVVGVESFTDKLPAHAVSGMNVSSVQ 60
MK G++ GGVDPS+PRFKCQEC RALVVVGV+SF DKLPA A S + SSV
Sbjct: 1 MKAPAAAAAAVGNRAGGVDPSIPRFKCQECHRALVVVGVDSFADKLPAQATSA-HASSVH 59
Query: 61 GSVMGASRMDNSYVVLSKQNRSHSHGIPPRPPSAGIPRAEPNQPTRAMEGSYIVLPPAAA 120
GS+MGASRMDNSYVVLSKQN+SH HGIPPRPPSA P EPNQPTRAMEGSYIVLPPAAA
Sbjct: 60 GSIMGASRMDNSYVVLSKQNKSHGHGIPPRPPSAAAPHIEPNQPTRAMEGSYIVLPPAAA 119
Query: 121 SIYKTSASEGGGAQLSPTSMNPGSPLPGNNFHSSVTVLKRAFEIATSQTQIEQPLCLDCM 180
SIYKTS SEGGGAQL P S+N S LPGN+FHS+VTVLKRAFEIATSQTQ+EQP+CLDCM
Sbjct: 120 SIYKTSTSEGGGAQLPPPSINSSSLLPGNSFHSNVTVLKRAFEIATSQTQVEQPMCLDCM 179
Query: 181 RLLSDKMEKEIEDVNTDNKAYEACLQRLEQETYNILSETDFXXXXXXXXXXXXXXXXXXX 240
RLLSDKM+KEIEDVN D KAYE CLQ LEQE++ +LS+ F
Sbjct: 180 RLLSDKMDKEIEDVNADIKAYEVCLQHLEQESHTVLSDAGFQKEKLKIEEEEKKLNAAIE 239
Query: 241 XXXXXYSEICSEMKCLETKSKQFEELEERYCHDLNSFQFQWISHQEERDAVLAKIEVSQV 300
YSEI SEMK LE KSK+FEELEERY H+ NSFQFQ SHQEERDA+LAKIEVSQV
Sbjct: 240 EAEKQYSEISSEMKDLEIKSKEFEELEERYWHEFNSFQFQLTSHQEERDAILAKIEVSQV 299
Query: 301 HLELLKRTNVLNDAFYISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQ 360
HLELLK+TNVLNDAFYISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQ
Sbjct: 300 HLELLKQTNVLNDAFYISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQ 359
Query: 361 YFFPKFEYRIKIHPMGSYPKVTDINQNTYELFGPVNLFWSTRFDKAMTWFLTCLQEFADF 420
YF PKFEYRIKIHPMGSYP+VTDI++NTYELFGPVNLFWSTRFDKAMTWFLTCLQ+FA+F
Sbjct: 360 YFTPKFEYRIKIHPMGSYPRVTDIHKNTYELFGPVNLFWSTRFDKAMTWFLTCLQDFAEF 419
Query: 421 AVSLDKENNVPPDKSLKLPYKIEGDKVGSYTIFLSFNKLDNWTKALKYMLCNLKWVLYWF 480
A+SLDKENNVPP+KSLKLPYKI+GDKVGS+TIFLSFNK++NWTKALKY LCNLKWVLYWF
Sbjct: 420 AISLDKENNVPPEKSLKLPYKIDGDKVGSHTIFLSFNKVENWTKALKYTLCNLKWVLYWF 479
Query: 481 IGNTSFAPPSGSLHVAQSSK 500
IGNTSFAPPSGSL AQSSK
Sbjct: 480 IGNTSFAPPSGSLCAAQSSK 499
>Os03g0258500 Autophagy protein Apg6 family protein
Length = 543
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/468 (79%), Positives = 401/468 (85%), Gaps = 8/468 (1%)
Query: 18 VDPSLPRFKCQECQRALVVVGVESF-TDKLPAHAVSGMNVSSVQGSVMGASRMDNSYVVL 76
VDPS+PRFKCQEC RALVVVGV+SF DKLPA A SG +VSSV GS+MGASRMDNSYVVL
Sbjct: 77 VDPSIPRFKCQECHRALVVVGVDSFAADKLPAQATSG-HVSSVHGSIMGASRMDNSYVVL 135
Query: 77 SKQNRSHSHGIPPRPPSAGIPRAEPNQPTRAMEGSYIVLPPAAASIYKTSASEGGGAQLS 136
SKQN+SH HGIPPRPPSA P EPNQPTRAMEGSYIVLPPAAASIYKTS SEGGGAQL
Sbjct: 136 SKQNKSHGHGIPPRPPSAAAPHIEPNQPTRAMEGSYIVLPPAAASIYKTSTSEGGGAQLP 195
Query: 137 PTSMNPGSPLPGNNFHSSVTVLKRAFEIATSQTQIEQPLCLDCMRLLSDKMEKEIEDVNT 196
P S+N S L GN+FHS+VTVLKRAFEIATSQTQ+EQP+CL CMRLLSDKM+KEIEDVN
Sbjct: 196 PPSINSSSLLTGNSFHSNVTVLKRAFEIATSQTQVEQPMCLGCMRLLSDKMDKEIEDVNA 255
Query: 197 DNKAYEACLQRLEQETYNILSETDFXXXXXXXXXXXXXXXXXXXXXXXXYSEICSEMKCL 256
D KA+E CLQ LEQE+YN+LS+ F YSEI SEMK L
Sbjct: 256 DIKAHEVCLQHLEQESYNVLSDAGFQEEKLKIEEEEKKLNAAIEEAEKQYSEISSEMKDL 315
Query: 257 ETKSKQFEELEERYCHDLNSFQFQWISHQEERDAVLAKIEVSQVHLELLKRTNVLNDAFY 316
E KSK+FEELEERY H+ NSFQFQ SHQEER+A+LAKIEVSQVHLELLKR NVLNDAFY
Sbjct: 316 EIKSKEFEELEERYWHEFNSFQFQLTSHQEEREAILAKIEVSQVHLELLKRRNVLNDAFY 375
Query: 317 ISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFFPKFEYRIKIHPMG 376
ISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYF PKFEYRIKIHPMG
Sbjct: 376 ISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFTPKFEYRIKIHPMG 435
Query: 377 SYPKVTDINQNTYEL------FGPVNLFWSTRFDKAMTWFLTCLQEFADFAVSLDKENNV 430
SY +VTDI++NTYEL FGPV+LFWSTRFDKAMTWFLTCLQ+FA+FA+SLDKENNV
Sbjct: 436 SYARVTDIHKNTYELYIMLTRFGPVDLFWSTRFDKAMTWFLTCLQDFAEFAISLDKENNV 495
Query: 431 PPDKSLKLPYKIEGDKVGSYTIFLSFNKLDNWTKALKYMLCNLKWVLY 478
PP+KSLKLPYKI+GDKVGS+TIFLSFNK++NWTKALKY LCNLKWVLY
Sbjct: 496 PPEKSLKLPYKIDGDKVGSHTIFLSFNKVENWTKALKYTLCNLKWVLY 543
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,951,378
Number of extensions: 714009
Number of successful extensions: 2809
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2804
Number of HSP's successfully gapped: 3
Length of query: 501
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 396
Effective length of database: 11,553,331
Effective search space: 4575119076
Effective search space used: 4575119076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)