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Os03g0644000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Autophagy protein Apg6 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0128) R2 : 0.394
β1 : 0.808 (0.0471) R2dD : 0.406 R2D : 0.354
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.131 (0.0274) R2dN8 : 0.0407 R2N8 : -0.0115
σ : 0.241
deviance : 26.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.32 0.212 10.1 0.766 0.335 -0.367 -0.211 -0.0663 0.116 2.42 0.2206 51 -- --
20.29 0.21 10.1 0.765 0.337 -0.364 -0.26 -- 0.118 2.44 0.04702 50 -- --
20.41 0.21 10.1 0.771 0.334 -0.369 -- -0.0798 0.114 2.49 0.04934 50 -- --
20.56 0.211 10.1 0.765 0.334 -0.368 -- -- 0.114 2.43 0.05 50 -- --
22.87 0.224 10.1 0.803 -- -0.181 -- -0.148 0.128 -- 0.2617 43 -- --
23.17 0.226 10 0.803 0.245 -- 0.146 -- 0.129 8.84 -- -- -- --
23.23 0.226 10 0.807 0.246 -- -- -- 0.129 8.66 -- -- -- --
23 0.224 10.1 0.799 -- -0.183 -- -- 0.127 -- 0.2901 19 -- --
35.92 0.279 10.1 -- 0.462 -0.466 -- -- 0.0612 1.77 0.00874 39 -- --
26.65 0.241 10.1 0.808 -- -- -- -- 0.131 -- -- -- -- --
40.41 0.297 10.1 -- 0.249 -- -- -- 0.0392 8.42 -- -- -- --
39.8 0.295 10.1 -- -- -0.19 -- -- 0.03 -- 0.01019 9 -- --
43.87 0.309 10.1 -- -- -- -- -- 0.0416 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.38 temperature 15.0 270 > th dose independent rect. 7 20
3 16.74 temperature 15.0 270 > th dose independent rect. 8 18
4 16.81 temperature 10.0 270 > th dose dependent rect. 19 8
8 16.95 humidity 50.0 270 > th dose independent rect. 7 20
9 16.97 radiation 20.0 270 < th dose independent rect. 3 4
10 16.98 humidity 50.0 270 > th dose dependent rect. 3 4
11 16.99 wind 9.0 270 < th dose independent rect. 3 4
12 16.99 temperature 10.0 270 > th dose independent rect. 3 4
14 16.99 temperature 30.0 270 < th dose independent rect. 3 4
15 16.99 humidity 50.0 270 > th dose independent rect. 3 4
18 16.99 atmosphere 995.0 270 > th dose independent rect. 3 4
19 16.99 atmosphere 1015.0 270 < th dose independent rect. 3 4
24 17.00 radiation 40.0 270 < th dose dependent rect. 3 4
26 17.01 wind 9.0 270 < th dose independent rect. 7 20
29 17.03 temperature 15.0 10 > th dose independent rect. 9 20
31 17.05 humidity 50.0 270 > th dose independent rect. 6 22
32 17.07 precipitation 0.1 270 < th dose independent rect. 3 4
33 17.07 temperature 15.0 270 > th dose independent rect. 19 8
34 17.07 precipitation 0.1 270 < th dose dependent rect. 3 4
36 17.08 atmosphere 1015.0 270 < th dose independent rect. 7 20
39 17.11 humidity 80.0 270 > th dose independent rect. 4 2
42 17.14 wind 9.0 270 < th dose independent rect. 4 2
43 17.14 temperature 10.0 270 > th dose independent rect. 4 2
45 17.14 temperature 30.0 270 < th dose independent rect. 4 2
46 17.14 humidity 50.0 270 > th dose independent rect. 4 2
49 17.14 atmosphere 995.0 270 > th dose independent rect. 4 2
50 17.14 atmosphere 1015.0 270 < th dose independent rect. 4 2
51 17.14 radiation 20.0 270 < th dose independent rect. 4 2
56 17.14 humidity 50.0 270 > th dose dependent rect. 4 2
58 17.16 precipitation 0.1 270 < th dose independent rect. 4 2
59 17.16 radiation 40.0 270 < th dose dependent rect. 4 2
60 17.16 precipitation 0.1 270 < th dose dependent rect. 4 2
84 17.23 wind 9.0 270 < th dose independent rect. 6 22
85 17.24 wind 9.0 270 < th dose dependent rect. 3 4
87 17.25 precipitation 0.1 270 < th dose independent rect. 7 20
90 17.25 precipitation 0.1 270 < th dose dependent rect. 7 20
101 17.30 temperature 15.0 270 > th dose independent rect. 7 7
107 17.32 temperature 30.0 270 < th dose independent rect. 18 9
108 17.32 radiation 1.0 270 < th dose independent rect. 18 9
109 17.32 radiation 1.0 270 < th dose dependent rect. 18 9
110 17.33 humidity 60.0 270 > th dose independent rect. 18 9
111 17.33 wind 9.0 270 < th dose dependent rect. 4 2
117 17.36 atmosphere 1015.0 270 < th dose independent rect. 8 18
122 17.37 radiation 1.0 10 < th dose dependent sin 10 NA
123 17.37 temperature 10.0 270 > th dose dependent rect. 3 4
124 17.39 temperature 10.0 270 > th dose dependent rect. 4 2
129 17.40 radiation 1.0 90 < th dose dependent sin 11 NA
130 17.41 wind 7.0 10 < th dose independent rect. 5 4
132 17.41 temperature 10.0 10 > th dose independent rect. 5 4
134 17.41 temperature 30.0 10 < th dose independent rect. 5 4
135 17.41 humidity 50.0 10 > th dose independent rect. 5 4
137 17.41 atmosphere 995.0 10 > th dose independent rect. 5 4
138 17.41 atmosphere 1015.0 10 < th dose independent rect. 5 4
141 17.41 precipitation 0.1 270 < th dose independent rect. 6 22
143 17.41 precipitation 0.1 270 < th dose dependent rect. 6 22
144 17.42 precipitation 0.1 10 < th dose independent rect. 5 4
146 17.42 precipitation 0.1 10 < th dose dependent rect. 5 4
153 17.44 wind 9.0 270 < th dose independent rect. 2 6
154 17.44 temperature 10.0 270 > th dose independent rect. 2 6
156 17.44 temperature 30.0 270 < th dose independent rect. 2 6
157 17.44 humidity 50.0 270 > th dose independent rect. 2 6
159 17.44 atmosphere 995.0 270 > th dose independent rect. 2 6
160 17.44 atmosphere 1015.0 270 < th dose independent rect. 2 6
170 17.45 radiation 1.0 270 > th dose independent rect. 7 7
171 17.45 wind 9.0 90 < th dose independent rect. 9 19
172 17.45 atmosphere 1015.0 10 < th dose independent rect. 9 20
173 17.46 radiation 40.0 10 < th dose independent rect. 5 4
188 17.47 wind 9.0 10 < th dose independent rect. 9 20
189 17.47 wind 9.0 10 < th dose dependent rect. 5 4
204 17.48 precipitation 0.1 10 < th dose independent rect. 9 20
206 17.48 temperature 10.0 10 > th dose dependent rect. 20 9
207 17.48 precipitation 0.1 10 < th dose dependent rect. 9 20
211 17.49 precipitation 0.1 270 < th dose independent rect. 7 8
212 17.49 wind 9.0 270 < th dose independent rect. 18 9
218 17.49 precipitation 0.1 270 < th dose dependent rect. 7 8
225 17.51 atmosphere 1015.0 270 < th dose independent rect. 7 8
227 17.51 temperature 10.0 270 > th dose independent rect. 15 16
228 17.51 atmosphere 995.0 270 > th dose independent rect. 15 16
230 17.51 temperature 30.0 270 < th dose independent rect. 7 20
234 17.52 precipitation 0.1 270 < th dose independent rect. 2 6
241 17.52 temperature 10.0 270 > th dose independent rect. 3 15
242 17.52 atmosphere 1015.0 270 < th dose independent rect. 3 15
246 17.52 precipitation 0.1 270 < th dose dependent rect. 2 6
251 17.53 atmosphere 995.0 270 > th dose independent rect. 19 8
276 17.55 atmosphere 995.0 270 > th dose independent rect. 7 8
284 17.56 wind 9.0 270 < th dose independent rect. 7 8
285 17.56 precipitation 0.1 270 < th dose independent rect. 3 15
286 17.56 radiation 40.0 270 < th dose independent rect. 15 16
287 17.56 precipitation 0.1 270 < th dose independent rect. 15 16
290 17.56 precipitation 0.1 270 < th dose dependent rect. 3 15
291 17.56 precipitation 0.1 270 < th dose dependent rect. 15 16
293 17.57 wind 9.0 270 < th dose independent rect. 15 16
326 17.59 atmosphere 1015.0 270 < th dose independent rect. 19 8
328 17.59 temperature 30.0 270 < th dose independent rect. 9 17
341 17.60 temperature 10.0 10 > th dose dependent rect. 22 7
342 17.61 radiation 1.0 10 > th dose independent sin 10 NA
352 17.61 humidity 50.0 270 > th dose independent rect. 7 7
354 17.61 wind 9.0 270 < th dose independent rect. 3 15
359 17.62 precipitation 0.1 270 < th dose independent rect. 18 9
364 17.62 precipitation 0.1 270 < th dose dependent rect. 18 9
369 17.63 temperature 15.0 270 > th dose independent rect. 22 15
372 17.63 radiation 40.0 10 < th dose dependent rect. 5 4
374 17.64 wind 9.0 270 < th dose dependent rect. 18 9
376 17.65 temperature 15.0 10 > th dose independent rect. 20 9
377 17.65 atmosphere 995.0 10 > th dose independent rect. 9 20
387 17.66 atmosphere 995.0 270 > th dose independent rect. 3 16
412 17.71 precipitation 0.1 270 < th dose independent rect. 8 18
416 17.71 precipitation 0.1 270 < th dose dependent rect. 8 18
440 17.74 atmosphere 995.0 270 > th dose independent rect. 7 20
443 17.75 radiation 1.0 10 < th dose independent sin 10 NA
474 17.76 temperature 10.0 10 > th dose dependent rect. 5 4
506 17.81 wind 1.0 270 > th dose independent rect. 7 7
532 17.84 atmosphere 1010.0 10 < th dose independent rect. 22 7
591 17.88 temperature 15.0 10 > th dose independent rect. 22 7
593 17.88 atmosphere 1010.0 10 < th dose independent rect. 20 9
628 17.90 atmosphere 995.0 270 > th dose dependent rect. 4 2
633 17.90 radiation 40.0 10 < th dose dependent rect. 5 6
643 17.91 radiation 1.0 270 < th dose independent rect. 3 7
682 17.93 radiation 1.0 10 > th dose independent rect. 18 15
690 17.94 radiation 40.0 10 < th dose independent rect. 5 6
714 17.95 wind 9.0 10 < th dose dependent rect. 20 9
726 17.97 humidity 50.0 90 > th dose dependent rect. 4 7
730 17.98 temperature 30.0 90 < th dose independent rect. 11 17
766 18.01 atmosphere 1015.0 270 < th dose independent rect. 22 15
776 18.02 wind 1.0 270 > th dose independent rect. 3 3
778 18.02 humidity 50.0 270 > th dose independent rect. 22 15
780 18.02 atmosphere 995.0 10 > th dose dependent rect. 5 4
790 18.03 precipitation 0.1 10 < th dose independent rect. 5 15
793 18.03 precipitation 0.1 10 < th dose dependent rect. 5 15
835 18.07 atmosphere 995.0 270 > th dose dependent rect. 3 4
855 18.08 temperature 10.0 1440 > th dose independent rect. 5 5
858 18.08 atmosphere 995.0 1440 > th dose independent rect. 5 5
859 18.08 atmosphere 1015.0 1440 < th dose independent rect. 5 5
860 18.08 wind 1.0 10 > th dose independent rect. 9 7
861 18.08 temperature 10.0 1440 > th dose independent rect. 10 19
883 18.09 radiation 1.0 10 < th dose dependent rect. 20 9
887 18.10 temperature 10.0 10 > th dose independent rect. 9 7
889 18.10 atmosphere 1015.0 10 < th dose independent rect. 9 7
891 18.10 precipitation 0.1 10 < th dose independent rect. 9 7
892 18.10 wind 9.0 10 < th dose independent rect. 20 9
894 18.10 temperature 30.0 10 < th dose independent rect. 20 9
895 18.10 humidity 50.0 10 > th dose independent rect. 20 9
898 18.10 atmosphere 995.0 10 > th dose independent rect. 20 9
899 18.10 radiation 1.0 10 < th dose independent rect. 20 9
911 18.10 temperature 10.0 10 > th dose independent rect. 5 15
913 18.10 atmosphere 1015.0 10 < th dose independent rect. 5 15
914 18.10 temperature 10.0 10 > th dose independent rect. 16 17
925 18.10 precipitation 0.1 10 < th dose dependent rect. 9 7
933 18.11 wind 9.0 4320 < th dose independent rect. 6 3
943 18.11 radiation 1.0 10 > th dose independent rect. 5 4
958 18.11 precipitation 0.1 270 < th dose independent rect. 22 15
962 18.11 precipitation 0.1 270 < th dose dependent rect. 22 15
968 18.12 temperature 10.0 270 > th dose independent rect. 13 9
971 18.12 atmosphere 995.0 270 > th dose independent rect. 22 15
979 18.13 wind 1.0 10 > th dose independent rect. 5 4
989 18.14 precipitation 0.1 270 < th dose independent rect. 13 9
990 18.14 precipitation 0.1 10 < th dose independent rect. 20 9
996 18.14 precipitation 0.1 270 < th dose dependent rect. 13 9
997 18.14 precipitation 0.1 10 < th dose dependent rect. 20 9