Os03g0258500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Autophagy protein Apg6 family protein.
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Os03g0258500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Autophagy protein Apg6 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.08 | 0.294 | 2.86 | 0.0976 | 0.0783 | -11.6 | 0.00458 | 33.8 | 0.00141 | 8.95 | 44.06 | 152 | -- | -- |
| 40.08 | 0.295 | 2.93 | -0.0787 | 0.0259 | 1.69 | 0.159 | -- | 0.00247 | 13.7 | 44.43 | 80 | -- | -- |
| 38.81 | 0.29 | 2.84 | 0.153 | 0.063 | -13.3 | -- | 37.8 | 0.00738 | 8.24 | 43.15 | 152 | -- | -- |
| 39.46 | 0.293 | 2.93 | -0.0875 | 0.0328 | 2.1 | -- | -- | 0.00769 | 12.6 | 44.31 | 145 | -- | -- |
| 39.02 | 0.291 | 2.82 | 0.221 | -- | -17 | -- | 46.7 | -0.00112 | -- | 43 | 152 | -- | -- |
| 44.86 | 0.314 | 2.93 | -0.0183 | 0.0609 | -- | 0.313 | -- | -0.00392 | 13.8 | -- | -- | -- | -- |
| 45.05 | 0.314 | 2.93 | -0.00934 | 0.0826 | -- | -- | -- | -0.00308 | 10.6 | -- | -- | -- | -- |
| 39.56 | 0.293 | 2.93 | -0.0798 | -- | 2.08 | -- | -- | 0.00242 | -- | 44.48 | 146 | -- | -- |
| 39.42 | 0.292 | 2.93 | -- | 0.073 | 2.02 | -- | -- | 0.0104 | 8.99 | 44.45 | 145 | -- | -- |
| 45.47 | 0.315 | 2.93 | -0.0109 | -- | -- | -- | -- | -0.00351 | -- | -- | -- | -- | -- |
| 45.06 | 0.314 | 2.93 | -- | 0.0826 | -- | -- | -- | -0.00204 | 10.7 | -- | -- | -- | -- |
| 39.73 | 0.294 | 2.93 | -- | -- | 2.03 | -- | -- | 0.0109 | -- | 44.44 | 146 | -- | -- |
| 45.48 | 0.315 | 2.93 | -- | -- | -- | -- | -- | -0.0023 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.18 | humidity | 50 | 90 | < th | dose independent | rect. | 14 | 21 |
| 3 | 38.31 | humidity | 50 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 4 | 38.36 | humidity | 50 | 90 | < th | dose dependent | sin | 11 | NA |
| 6 | 38.57 | humidity | 50 | 90 | < th | dose independent | rect. | 15 | 3 |
| 23 | 38.57 | humidity | 50 | 90 | < th | dose dependent | rect. | 15 | 3 |
| 78 | 38.60 | wind | 1 | 30 | < th | dose independent | rect. | 15 | 1 |
| 79 | 38.60 | humidity | 50 | 10 | < th | dose independent | rect. | 15 | 1 |
| 82 | 38.60 | wind | 1 | 30 | < th | dose dependent | rect. | 15 | 1 |
| 83 | 38.60 | humidity | 50 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 126 | 38.61 | humidity | 50 | 30 | < th | dose independent | sin | 11 | NA |
| 213 | 38.76 | humidity | 50 | 90 | > th | dose independent | sin | 12 | NA |
| 276 | 40.17 | temperature | 30 | 30 | > th | dose independent | rect. | 15 | 1 |
| 423 | 40.67 | humidity | 50 | 270 | < th | dose independent | rect. | 14 | 23 |
| 425 | 40.72 | humidity | 50 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 426 | 40.73 | humidity | 50 | 270 | < th | dose dependent | sin | 23 | NA |
| 429 | 40.73 | humidity | 50 | 270 | < th | dose dependent | no | NA | NA |
| 430 | 40.73 | humidity | 50 | 270 | < th | dose dependent | rect. | 10 | 6 |
| 622 | 40.76 | humidity | 50 | 270 | < th | dose independent | rect. | 11 | 5 |
| 642 | 40.77 | humidity | 50 | 270 | < th | dose independent | rect. | 11 | 23 |
| 643 | 40.78 | humidity | 50 | 270 | < th | dose independent | sin | 21 | NA |
| 645 | 40.78 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |
| 822 | 40.82 | temperature | 30 | 30 | > th | dose independent | sin | 14 | NA |
| 833 | 40.88 | temperature | 30 | 30 | < th | dose independent | sin | 13 | NA |
| 838 | 40.89 | humidity | 50 | 270 | > th | dose independent | no | NA | NA |
| 843 | 40.91 | humidity | 50 | 270 | > th | dose independent | sin | 0 | NA |
| 867 | 40.93 | humidity | 50 | 270 | < th | dose dependent | sin | 7 | NA |
| 943 | 41.10 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 2 |