BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0638800 Os03g0638800|J065198E20
(111 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0638800 Protein kinase domain containing protein 232 5e-62
Os01g0641000 Similar to Protein kinase 99 6e-22
Os05g0577700 Similar to Protein kinase 99 7e-22
Os12g0605900 Similar to Kinase like protein 93 3e-20
Os03g0745700 Protein kinase-like domain containing protein 67 3e-12
>Os03g0638800 Protein kinase domain containing protein
Length = 111
Score = 232 bits (591), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQVCLESGYTPIVSLS 60
QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQVCLESGYTPIVSLS
Sbjct: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQVCLESGYTPIVSLS 60
Query: 61 FFTQMINPTSMDRTCAQTFLDAVQVHSQISCGNAGMQILISVLIWMRWCSF 111
FFTQMINPTSMDRTCAQTFLDAVQVHSQISCGNAGMQILISVLIWMRWCSF
Sbjct: 61 FFTQMINPTSMDRTCAQTFLDAVQVHSQISCGNAGMQILISVLIWMRWCSF 111
>Os01g0641000 Similar to Protein kinase
Length = 388
Score = 99.4 bits (246), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+VL+G PYNRKCDVYSFGICLWEIYCCDMPYPDLSF++V+SAVV Q
Sbjct: 274 EVLNGHPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQ 319
>Os05g0577700 Similar to Protein kinase
Length = 406
Score = 99.0 bits (245), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+VL+G PYNRKCDVYSFGICLWEIYCCDMPYPDLSF++V+SAVV Q
Sbjct: 292 EVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQ 337
>Os12g0605900 Similar to Kinase like protein
Length = 400
Score = 93.2 bits (230), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/49 (81%), Positives = 42/49 (85%), Gaps = 3/49 (6%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDM---PYPDLSFADVSSAVVHQ 46
+VLDGKPYNRKCDVYSFGICLWE YCCDM PY DLSFAD SS VVH+
Sbjct: 279 EVLDGKPYNRKCDVYSFGICLWETYCCDMPYGPYSDLSFADFSSFVVHK 327
>Os03g0745700 Protein kinase-like domain containing protein
Length = 358
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAV 43
+VL G+ Y+ KCDVYSFG+ LWE YCC M YP+ S AD+S V
Sbjct: 241 EVLQGRAYDHKCDVYSFGVLLWETYCCAMAYPNYSLADISYHV 283
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.138 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,876,419
Number of extensions: 131061
Number of successful extensions: 1240
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1239
Number of HSP's successfully gapped: 5
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)