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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0638800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0156) R2 : 0.0769
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.203 (0.0329) R2dN8 : 0.0993 R2N8 : 0.0769
σ : 0.294
deviance : 39.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.4 0.196 12.3 0.0139 0.678 -0.753 0.0462 -0.915 0.0761 3.66 26.68 237 -- --
18.71 0.201 12.3 -0.129 0.73 -0.818 -0.104 -- 0.0842 3.64 45.1 179 -- --
17.4 0.194 12.3 0.00592 0.676 -0.753 -- -0.884 0.0745 3.65 26.6 231 -- --
18.73 0.202 12.3 -0.133 0.74 -0.838 -- -- 0.08 3.49 63.84 118 -- --
29.92 0.255 12.3 -0.0162 -- -0.664 -- -0.737 0.125 -- 33.7 2620 -- --
25.42 0.236 12.3 0.0351 0.503 -- -0.254 -- 0.195 3.56 -- -- -- --
25.62 0.237 12.3 0.0394 0.502 -- -- -- 0.196 3.53 -- -- -- --
30.38 0.257 12.4 -0.206 -- -0.67 -- -- 0.0706 -- 68.09 2612 -- --
19.15 0.204 12.3 -- 0.718 -0.772 -- -- 0.103 3.49 79.69 118 -- --
39.67 0.294 12.3 0.0605 -- -- -- -- 0.21 -- -- -- -- --
25.66 0.237 12.3 -- 0.502 -- -- -- 0.192 3.53 -- -- -- --
31.32 0.261 12.3 -- -- -0.583 -- -- 0.108 -- 83.38 2606 -- --
39.77 0.294 12.3 -- -- -- -- -- 0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.61 temperature 30 270 < th dose dependent rect. 17 16
21 16.22 temperature 30 270 < th dose dependent sin 12 NA
32 16.45 temperature 10 270 > th dose dependent sin 11 NA
49 16.75 temperature 25 4320 > th dose independent rect. 19 5
55 16.78 temperature 25 4320 < th dose independent rect. 19 6
57 16.79 temperature 25 4320 > th dose independent rect. 20 2
66 16.84 temperature 25 4320 < th dose independent rect. 20 2
111 16.96 temperature 20 270 > th dose dependent rect. 18 11
122 17.01 temperature 10 270 > th dose dependent rect. 7 22
203 17.25 temperature 30 720 < th dose dependent rect. 19 5
286 17.42 temperature 30 720 < th dose dependent rect. 15 9
305 17.46 temperature 30 720 < th dose dependent rect. 12 13
317 17.48 temperature 30 720 < th dose dependent rect. 13 11
324 17.50 temperature 25 4320 > th dose independent sin 14 NA
325 17.50 temperature 25 4320 < th dose independent sin 13 NA
361 17.53 temperature 15 270 > th dose dependent rect. 17 23
376 17.55 temperature 30 270 < th dose dependent rect. 2 23
417 17.61 temperature 25 90 < th dose dependent rect. 5 23
426 17.63 temperature 20 4320 > th dose dependent rect. 20 1
485 17.70 temperature 30 4320 < th dose dependent rect. 20 1
487 17.70 temperature 10 720 > th dose dependent rect. 17 8
494 17.70 temperature 30 270 < th dose dependent rect. 18 23
497 17.71 temperature 25 720 < th dose independent rect. 13 20
513 17.72 temperature 25 4320 > th dose dependent rect. 20 5
555 17.76 temperature 30 270 < th dose dependent no NA NA
577 17.78 temperature 25 270 < th dose independent rect. 17 16
601 17.80 temperature 25 720 > th dose independent rect. 16 17
677 17.84 temperature 20 10 > th dose dependent rect. 20 10
896 17.97 temperature 25 720 < th dose independent sin 15 NA
898 17.97 temperature 25 720 > th dose independent rect. 16 11