BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0638800 Os03g0638800|J065198E20
(111 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22750.1 | chr3:8037364-8039096 REVERSE LENGTH=379 106 3e-24
AT4G14780.1 | chr4:8492989-8494480 FORWARD LENGTH=365 101 7e-23
AT3G01490.1 | chr3:191095-193258 REVERSE LENGTH=412 99 3e-22
AT5G50000.1 | chr5:20342838-20345033 REVERSE LENGTH=386 99 6e-22
AT3G63260.1 | chr3:23373090-23374747 REVERSE LENGTH=392 96 3e-21
AT3G46930.1 | chr3:17286160-17288032 FORWARD LENGTH=476 51 1e-07
AT5G58950.1 | chr5:23801136-23803025 REVERSE LENGTH=526 49 4e-07
AT4G24480.1 | chr4:12650410-12654755 FORWARD LENGTH=957 47 2e-06
AT5G11850.1 | chr5:3816632-3821024 REVERSE LENGTH=881 46 3e-06
>AT3G22750.1 | chr3:8037364-8039096 REVERSE LENGTH=379
Length = 378
Score = 106 bits (264), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/46 (93%), Positives = 45/46 (97%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+VLDGKPYNR+CDVYSFGICLWEIYCCDMPYPDLSFADVSSAVV Q
Sbjct: 265 EVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQ 310
>AT4G14780.1 | chr4:8492989-8494480 FORWARD LENGTH=365
Length = 364
Score = 101 bits (252), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/44 (90%), Positives = 43/44 (97%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVV 44
+V+DGKPYNR+CDVYSFGICLWEIYCCDMPYPDLSF DVSSAVV
Sbjct: 251 EVIDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFVDVSSAVV 294
>AT3G01490.1 | chr3:191095-193258 REVERSE LENGTH=412
Length = 411
Score = 99.4 bits (246), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+VL+G PYNRKCDVYSFGICLWEIYCCDMPYPDLSF++V+SAVV Q
Sbjct: 298 EVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQ 343
>AT5G50000.1 | chr5:20342838-20345033 REVERSE LENGTH=386
Length = 385
Score = 98.6 bits (244), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/46 (82%), Positives = 44/46 (95%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+VL+G PYNRKCDVYSFGICLWEIYCCDMPYPDL+F++V+SAVV Q
Sbjct: 272 EVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLTFSEVTSAVVRQ 317
>AT3G63260.1 | chr3:23373090-23374747 REVERSE LENGTH=392
Length = 391
Score = 96.3 bits (238), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/46 (80%), Positives = 43/46 (93%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+VL+GKPYNRKCDVYSFG+CLWEIYCCDMPY D SFA++S AVVH+
Sbjct: 278 EVLEGKPYNRKCDVYSFGVCLWEIYCCDMPYADCSFAEISHAVVHR 323
>AT3G46930.1 | chr3:17286160-17288032 FORWARD LENGTH=476
Length = 475
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFAD-VSSAVVHQ 46
+VL P+ RKCDVYSFG+ LWE+ +PY ++ FA+ ++ AV+++
Sbjct: 330 EVLKRIPHGRKCDVYSFGLLLWEMVAGALPYEEMKFAEQIAYAVIYK 376
>AT5G58950.1 | chr5:23801136-23803025 REVERSE LENGTH=526
Length = 525
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+++ KP+ RK DVYSFG+ LWE+ +PY D++ + AVVH+
Sbjct: 379 EMIKRKPHGRKADVYSFGLVLWEMVAGAIPYEDMNPIQAAFAVVHK 424
>AT4G24480.1 | chr4:12650410-12654755 FORWARD LENGTH=957
Length = 956
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+ L G+P N K DVYSFG+ LWE+ P+ LS A V AV Q
Sbjct: 844 EFLRGEPTNEKSDVYSFGVVLWELITLQQPWNGLSPAQVVGAVAFQ 889
>AT5G11850.1 | chr5:3816632-3821024 REVERSE LENGTH=881
Length = 880
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 1 QVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQ 46
+VL +P N KCDVYSFG+ LWE+ +P+ L+ V AV Q
Sbjct: 777 EVLRNEPANEKCDVYSFGVILWELATSRVPWKGLNPMQVVGAVGFQ 822
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.138 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,590,867
Number of extensions: 93108
Number of successful extensions: 892
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 892
Number of HSP's successfully gapped: 9
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)