Os01g0641000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase.
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Os01g0641000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.2 | 0.267 | 11.4 | -0.5 | 0.345 | 1.32 | -0.0859 | -1.64 | -0.0507 | 2.08 | 20.43 | 1389 | -- | -- |
| 33.59 | 0.27 | 11.4 | -0.172 | 0.308 | 1.54 | -0.129 | -- | 0.0561 | 1.8 | 13.69 | 2719 | -- | -- |
| 32.19 | 0.264 | 11.4 | -0.528 | 0.339 | 1.31 | -- | -1.76 | -0.0574 | 2.12 | 20.7 | 1378 | -- | -- |
| 33.47 | 0.269 | 11.4 | -0.175 | 0.295 | 1.56 | -- | -- | 0.0553 | 2.74 | 13.84 | 2578 | -- | -- |
| 36.39 | 0.281 | 11.4 | -0.525 | -- | 1.46 | -- | -1.85 | -0.0628 | -- | 20.46 | 1189 | -- | -- |
| 81.67 | 0.424 | 11.3 | 0.44 | 0.456 | -- | -0.0704 | -- | 0.374 | 2.15 | -- | -- | -- | -- |
| 81.69 | 0.423 | 11.3 | 0.442 | 0.456 | -- | -- | -- | 0.374 | 2.16 | -- | -- | -- | -- |
| 38.27 | 0.288 | 11.4 | -0.191 | -- | 1.65 | -- | -- | 0.0435 | -- | 13.7 | 2558 | -- | -- |
| 34.08 | 0.272 | 11.4 | -- | 0.296 | 1.49 | -- | -- | 0.0848 | 2.83 | 12.85 | 2540 | -- | -- |
| 94.12 | 0.453 | 11.3 | 0.461 | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
| 86.83 | 0.436 | 11.3 | -- | 0.464 | -- | -- | -- | 0.325 | 2.18 | -- | -- | -- | -- |
| 36.84 | 0.283 | 11.4 | -- | -- | 1.76 | -- | -- | 0.0742 | -- | 15.3 | 1164 | -- | -- |
| 99.72 | 0.466 | 11.3 | -- | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.45 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 31.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 14 | 31.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 24 | 31.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 33 | 32.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 37 | 32.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 42 | 32.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 13 |
| 45 | 32.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 49 | 32.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 51 | 32.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 56 | 32.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 61 | 32.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 94 | 32.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 101 | 32.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 22 |
| 160 | 32.39 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 163 | 32.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 169 | 32.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 170 | 32.42 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 178 | 32.44 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 287 | 32.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 20 |
| 302 | 32.63 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 422 | 32.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 445 | 32.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 9 |
| 526 | 32.82 | temperature | 15 | 1440 | > th | dose dependent | sin | 6 | NA |
| 637 | 32.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 759 | 32.98 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 827 | 33.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 853 | 33.03 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 930 | 33.08 | temperature | 25 | 4320 | < th | dose independent | sin | 2 | NA |
| 938 | 33.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 949 | 33.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |