BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0608800 Os03g0608800|AK071245
(403 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0608800 Peptidase, trypsin-like serine and cysteine do... 785 0.0
Os09g0436700 Peptidase, trypsin-like serine and cysteine do... 77 2e-14
Os01g0278600 Peptidase, trypsin-like serine and cysteine do... 76 4e-14
>Os03g0608800 Peptidase, trypsin-like serine and cysteine domain containing
protein
Length = 403
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/403 (94%), Positives = 380/403 (94%)
Query: 1 MSARDADTGEPPAKQRAINPVVPTKHPWNLPAQIPLLHCSCRPEDQVLVIPREANLPIDA 60
MSARDADTGEPPAKQRAINPVVPTKHPWNLPAQIPLLHCSCRPEDQVLVIPREANLPIDA
Sbjct: 1 MSARDADTGEPPAKQRAINPVVPTKHPWNLPAQIPLLHCSCRPEDQVLVIPREANLPIDA 60
Query: 61 ETXXXXXXXXXXXXXXXXXXXXXXXLYKASGFIIDFDKSSMIGTIISSATVNIHDPAFPD 120
ET LYKASGFIIDFDKSSMIGTIISSATVNIHDPAFPD
Sbjct: 61 ETRKVVARVSQAVVSVVSFDVDGDRLYKASGFIIDFDKSSMIGTIISSATVNIHDPAFPD 120
Query: 121 VEKINIYLFDGVSYDATIIACDHHWNLLVLSVLFYPVVKTMKFVEINESRTARDAYHGIA 180
VEKINIYLFDGVSYDATIIACDHHWNLLVLSVLFYPVVKTMKFVEINESRTARDAYHGIA
Sbjct: 121 VEKINIYLFDGVSYDATIIACDHHWNLLVLSVLFYPVVKTMKFVEINESRTARDAYHGIA 180
Query: 181 MLQPHSTRYKLCPGDTIIGLGRQSQEPFGLQANRGIYSVERWADLPKICQEMLRATFINT 240
MLQPHSTRYKLCPGDTIIGLGRQSQEPFGLQANRGIYSVERWADLPKICQEMLRATFINT
Sbjct: 181 MLQPHSTRYKLCPGDTIIGLGRQSQEPFGLQANRGIYSVERWADLPKICQEMLRATFINT 240
Query: 241 FTAIGGPAINKKGNVIGMLFHSMSFTPFLPSNIILKWWDYFKTTGKYCRPMISFVGYNLH 300
FTAIGGPAINKKGNVIGMLFHSMSFTPFLPSNIILKWWDYFKTTGKYCRPMISFVGYNLH
Sbjct: 241 FTAIGGPAINKKGNVIGMLFHSMSFTPFLPSNIILKWWDYFKTTGKYCRPMISFVGYNLH 300
Query: 301 VARSSRWVDVPTSLHEGLDGILVEMVSRELLSAGLQEKDLIIRCNGKRVTTNLQLFEVLV 360
VARSSRWVDVPTSLHEGLDGILVEMVSRELLSAGLQEKDLIIRCNGKRVTTNLQLFEVLV
Sbjct: 301 VARSSRWVDVPTSLHEGLDGILVEMVSRELLSAGLQEKDLIIRCNGKRVTTNLQLFEVLV 360
Query: 361 ENIAKTVEVTIVKAENCNTQSIYLPVEEAIEKCFYQWPISRYY 403
ENIAKTVEVTIVKAENCNTQSIYLPVEEAIEKCFYQWPISRYY
Sbjct: 361 ENIAKTVEVTIVKAENCNTQSIYLPVEEAIEKCFYQWPISRYY 403
>Os09g0436700 Peptidase, trypsin-like serine and cysteine domain containing
protein
Length = 489
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 134/299 (44%), Gaps = 34/299 (11%)
Query: 86 LYKASGFIIDFDKSSMIGTIISSATV--NIHDPAFPDVEKINIYLFDGVSYDATIIACDH 143
L+ SG II+F + I ++++SA++ + D KIN++L G + I D
Sbjct: 160 LFSCSGTIIEF--LNGICSVVTSASLIRCMDKDEQADELKINVWLPSGEKCEGFISNVDL 217
Query: 144 HWNLLVLSVLFYPVVKTMKFVEINESRTARDAYHGIAMLQPHSTRYKLCPGDTIIGLGRQ 203
++N+ +++V + F N+ D Y HS ++ LGR
Sbjct: 218 YYNICLVTVHCTSNLPKKSF---NDDTGFFDLYGN------HSK--------DVVALGR- 259
Query: 204 SQEPFGLQANRG--IYSVERWADLPKICQEMLRATFINTFTAIGGPAINKKGNVIGMLFH 261
S EP+ L+ G I R+ C+E+L ++ T +GGP ++ GN++GM F+
Sbjct: 260 SCEPWSLKVASGKLIPRRHRFD-----CEELLVSSCKITKIGVGGPLMDFNGNIVGMNFY 314
Query: 262 SMSFTPFLPSNIILKWWDYFKTTGKYCRPMISFVGYNLHVARSSRWVDVPTSLHE--GLD 319
TPFLPS I+LK +FK GK RP+ NLH + HE +
Sbjct: 315 DKKETPFLPSFIVLKCLQHFKEFGKVVRPLHGLRVGNLH---KESLASLEKICHEFPKVC 371
Query: 320 GILVEMVSRELLSAGLQEKDLIIRCNGKRVTTNLQLFEVLVENIAKTVEVTIVKAENCN 378
G++VE V + ++ D+I +G + + +L++ + +E+CN
Sbjct: 372 GVIVEKVEPSAEHSEIKVGDIITHLDGMAFSNAAEFGGILLDRCVTQMLEKQNLSEDCN 430
>Os01g0278600 Peptidase, trypsin-like serine and cysteine domain containing
protein
Length = 470
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 133/281 (47%), Gaps = 32/281 (11%)
Query: 90 SGFIIDFDKSSMIGTIISSATVNIHDPAFPDVEKINIYLFDGVSYDATIIACDHHWNLLV 149
SGF+I ++ S+ IGTI++SA + + P DV ++ ++L G I D H N+ +
Sbjct: 156 SGFVIRWNDSTSIGTILTSAAL-VRPPCGDDV-RVEVFLPSGDISICQISMVDFHHNIAL 213
Query: 150 LSVLFYPVVKTMKFVEINESRTARDAYHGIAMLQPHSTRYKLCPGDTIIGLGRQSQEPFG 209
+ V T F + + +Y + GD ++ LGR S E
Sbjct: 214 VEV-------TSNF----------------KLQEAVILKYIIDKGD-VLALGR-SYEGGL 248
Query: 210 LQANRGIYSVERWADLPKICQEMLRATFINTFTAIGGPAINKKGNVIGMLFHSMSFTPFL 269
L +RG + A + + C E+L ++ T GGP +N G+V+G+ F + TPFL
Sbjct: 249 LMCSRG--EISNRASIFE-CSELLVSSCEITMAGTGGPLVNYNGHVVGINFFEENQTPFL 305
Query: 270 PSNIILKWWDYFKTTGKYCRPMISFVGYNLHVARSSRWVDVPTSLHEGLDGILVEMVSRE 329
I+ K ++ + G+ RP I F ++ + S + + +G+ + V+
Sbjct: 306 SMAIVFKCLEHHQIFGRIIRPWIGFWFTSIQMVPLSHLEHIYRKFSDVDNGLYISNVAEG 365
Query: 330 LLS--AGLQEKDLIIRCNGKRVTTNLQLFEVLVENIAKTVE 368
+ AG+ + D++++C GK ++T + +L++ +T+E
Sbjct: 366 SPADIAGICQGDILMKCGGKFLSTAPEFGAMLMDKCKETME 406
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,606,499
Number of extensions: 487135
Number of successful extensions: 1116
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 3
Length of query: 403
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 300
Effective length of database: 11,657,759
Effective search space: 3497327700
Effective search space used: 3497327700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)