Os03g0608800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os03g0608800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.92 | 0.253 | 11.2 | -0.0918 | 0.893 | -0.619 | -0.755 | 0.443 | -0.383 | 16.9 | 19.8 | 4370 | -- | -- |
| 29.13 | 0.251 | 11.2 | -0.0187 | 0.887 | -0.7 | -0.822 | -- | -0.358 | 16.9 | 19.4 | 4297 | -- | -- |
| 30.35 | 0.257 | 11.2 | -0.0904 | 0.887 | -0.624 | -- | 0.409 | -0.38 | 17 | 19.6 | 4524 | -- | -- |
| 30.51 | 0.257 | 11.2 | -0.0362 | 0.89 | -0.721 | -- | -- | -0.365 | 16.9 | 19.44 | 4395 | -- | -- |
| 70.76 | 0.392 | 11.2 | -0.114 | -- | -0.604 | -- | 0.43 | -0.398 | -- | 19.7 | 4747 | -- | -- |
| 37.51 | 0.287 | 11.2 | 0.398 | 0.877 | -- | -0.686 | -- | -0.186 | 16.9 | -- | -- | -- | -- |
| 38.72 | 0.291 | 11.2 | 0.396 | 0.873 | -- | -- | -- | -0.189 | 17 | -- | -- | -- | -- |
| 70.5 | 0.391 | 11.2 | -0.119 | -- | -0.767 | -- | -- | -0.397 | -- | 19 | 6269 | -- | -- |
| 30.54 | 0.257 | 11.2 | -- | 0.888 | -0.698 | -- | -- | -0.359 | 17 | 19.43 | 4393 | -- | -- |
| 78.79 | 0.415 | 11.2 | 0.364 | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
| 42.84 | 0.306 | 11.2 | -- | 0.866 | -- | -- | -- | -0.233 | 17 | -- | -- | -- | -- |
| 70.77 | 0.392 | 11.2 | -- | -- | -0.686 | -- | -- | -0.37 | -- | 18.91 | 6269 | -- | -- |
| 82.28 | 0.423 | 11.2 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.57 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 2 | 28.64 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 3 | 28.95 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 4 | 28.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 20 |
| 6 | 28.96 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 8 | 28.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 18 |
| 11 | 28.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 20 |
| 13 | 28.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 8 | 20 |
| 18 | 28.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 18 |
| 22 | 28.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 20 |
| 54 | 29.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 16 |
| 81 | 29.06 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 139 | 29.10 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 143 | 29.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 146 | 29.11 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 162 | 29.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 164 | 29.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 166 | 29.12 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 178 | 29.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 209 | 29.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 216 | 29.15 | temperature | 20 | 4320 | < th | dose independent | sin | 2 | NA |
| 222 | 29.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 227 | 29.16 | temperature | 20 | 4320 | > th | dose independent | sin | 1 | NA |
| 252 | 29.17 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 328 | 29.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 356 | 29.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 4 |
| 357 | 29.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 9 |
| 371 | 29.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 392 | 29.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 523 | 29.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 576 | 29.40 | temperature | 25 | 4320 | < th | dose dependent | sin | 22 | NA |
| 622 | 29.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 623 | 29.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 666 | 29.46 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 700 | 29.50 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 717 | 29.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 19 |
| 718 | 29.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 21 |
| 727 | 29.51 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 728 | 29.51 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 740 | 29.52 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 805 | 29.56 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 13 |
| 820 | 29.57 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 828 | 29.57 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 857 | 29.59 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 867 | 29.59 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 19 |
| 922 | 29.62 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 967 | 29.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 970 | 29.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 7 |