BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0607700 Os03g0607700|AK059013
(245 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0607700 Zinc finger, C2H2-type domain containing protein 295 1e-80
Os12g0581900 Zinc finger, C2H2-type domain containing protein 123 1e-28
AK061547 122 2e-28
Os07g0593000 Similar to Zinc-finger protein KNUCKLES 70 2e-12
Os03g0239300 Zinc finger, C2H2-type domain containing protein 65 3e-11
>Os03g0607700 Zinc finger, C2H2-type domain containing protein
Length = 245
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/245 (66%), Positives = 163/245 (66%)
Query: 1 MRVDREMERGDEASVNRGWLELRLGVNGGGGVETVPVTXXXXXXXXXXXXXXTVTXXXXX 60
MRVDREMERGDEASVNRGWLELRLGVNGGGGVETVPVT TVT
Sbjct: 1 MRVDREMERGDEASVNRGWLELRLGVNGGGGVETVPVTAADSSASSEAGEADTVTPSQQQ 60
Query: 61 XXXXXXXXXXXXXXXXXNKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYH 120
NKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYH
Sbjct: 61 QQQQQGSPSSPAASSAPNKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYH 120
Query: 121 LHHHRMMMAGAGLPLEAHAAFMRAALRVNPAGSAIHKXXXXXXXXXXITQDATAPRFHDG 180
LHHHRMMMAGAGLPLEAHAAFMRAALRVNPAGSAIHK ITQDATAPRFHDG
Sbjct: 121 LHHHRMMMAGAGLPLEAHAAFMRAALRVNPAGSAIHKQQQQHQPPPPITQDATAPRFHDG 180
Query: 181 XXXXXXXXXXXXXXXXXXXYDEVLSSSASSWPGSFRFRTXXXXXXXXXXXXXXXXXKKID 240
YDEVLSSSASSWPGSFRFRT KKID
Sbjct: 181 AAVAAAAAVTPWAPVAPLAYDEVLSSSASSWPGSFRFRTQPEPPPSSEQEPPSEQSKKID 240
Query: 241 LSLRL 245
LSLRL
Sbjct: 241 LSLRL 245
>Os12g0581900 Zinc finger, C2H2-type domain containing protein
Length = 195
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 91/167 (54%), Gaps = 41/167 (24%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYHLHHHRMMMAGAGLPLEAH 138
KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR+ H RMMM GLPLEAH
Sbjct: 70 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRS-------YHAQRMMM---GLPLEAH 119
Query: 139 AAFMRAALRVNPAGSAIHKXXXXXXXXXXITQDATAPRFHDGXXXXXXXXXXXXXXXXXX 198
AAF+ +LRVN S I K Q TAPRFH+G
Sbjct: 120 AAFVH-SLRVN-QSSVIQKASQQ-------AQIRTAPRFHEG-----------SISWPPI 159
Query: 199 XYDEVLSSSASSWPGSFRFRTXXXXXXXXXXXXXXXXXKKIDLSLRL 245
Y+EV + S+WPGSFR R+ KIDL+LRL
Sbjct: 160 AYEEVPN---STWPGSFRLRSQPSDQPSEQS--------KIDLNLRL 195
>AK061547
Length = 195
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 91/167 (54%), Gaps = 41/167 (24%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYHLHHHRMMMAGAGLPLEAH 138
KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR+ H RMMM GLPLEAH
Sbjct: 70 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRS-------YHAQRMMM---GLPLEAH 119
Query: 139 AAFMRAALRVNPAGSAIHKXXXXXXXXXXITQDATAPRFHDGXXXXXXXXXXXXXXXXXX 198
AAF+ +LRVN S I K Q TAPRFH+G
Sbjct: 120 AAFVH-SLRVN-QSSVIQKAGQQ-------AQIRTAPRFHEG-----------SISWPPI 159
Query: 199 XYDEVLSSSASSWPGSFRFRTXXXXXXXXXXXXXXXXXKKIDLSLRL 245
Y+EV + S+WPGSFR R+ KIDL+LRL
Sbjct: 160 AYEEVPN---STWPGSFRLRSQPSDQPSEQS--------KIDLNLRL 195
>Os07g0593000 Similar to Zinc-finger protein KNUCKLES
Length = 188
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 68/168 (40%), Gaps = 35/168 (20%)
Query: 78 NKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYHLHHHRMMMAGAGLPLEA 137
++ FSCN+CMRKFFSSQALGGHQNAHKRER A +++ HL GL A
Sbjct: 56 HRTFSCNYCMRKFFSSQALGGHQNAHKRERCAPRKSHGFQQQHLM--------VGLSPTA 107
Query: 138 HAAFMRAALRVNPAGSAIHKXXXXXXXXXXITQDATAPRFHDGXXXXXXXXXXXXXXXXX 197
++F+ +RVNP H +FH G
Sbjct: 108 PSSFLH-HMRVNP-----HATILKVNRGYSSADGVVVAKFHGGQMSSSWVPFA------- 154
Query: 198 XXYDEVLSSSASSWPGSFRFRTXXXXXXXXXXXXXXXXXKKIDLSLRL 245
V S WPGSF+ + +DLSLRL
Sbjct: 155 -----VEHGRGSVWPGSFK---------ASSQEQKKRTEEDLDLSLRL 188
>Os03g0239300 Zinc finger, C2H2-type domain containing protein
Length = 240
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 6/68 (8%)
Query: 79 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTP--SSSPY-HLHHHRMMMAGAGL-- 133
+VF+CN+C RKFFSSQALGGHQNAH+RER+ A+R + PY + + + GAGL
Sbjct: 78 RVFTCNYCQRKFFSSQALGGHQNAHRRERTLARRAVRLDAFPYGYADVASLPLYGAGLYP 137
Query: 134 -PLEAHAA 140
++AHA+
Sbjct: 138 IGIQAHAS 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,785,159
Number of extensions: 184691
Number of successful extensions: 836
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 6
Length of query: 245
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 147
Effective length of database: 11,918,829
Effective search space: 1752067863
Effective search space used: 1752067863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)