BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0583800 Os03g0583800|AK064786
         (358 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0583800  Mpv17/PMP22 family protein                          547   e-156
Os09g0315000  Mpv17/PMP22 family protein                          137   2e-32
Os08g0566900  Mpv17/PMP22 family protein                           69   5e-12

>Os03g0583800 Mpv17/PMP22 family protein
          Length = 358

 Score =  547 bits (1409), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/324 (84%), Positives = 273/324 (84%)

Query: 19  TRLLRGHHPPPSCXXXXXXXXXXXXXXXXXXXXXXXEEADVLPGPGAEGEMATGGRLEEQ 78
           TRLLRGHHPPPSC                       EEADVLPGPGAEGEMATGGRLEEQ
Sbjct: 19  TRLLRGHHPPPSCSAPSLLRLTRSSRRLRLRAAAAAEEADVLPGPGAEGEMATGGRLEEQ 78

Query: 79  PEGPIGGSQVDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKMLDRGINTAIVLGASTYA 138
           PEGPIGGSQVDI                            NKMLDRGINTAIVLGASTYA
Sbjct: 79  PEGPIGGSQVDIGGLAFQGDMGGGGFAGGSGGAGAGGGDGNKMLDRGINTAIVLGASTYA 138

Query: 139 LTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNPVLAKMMISGVVYSLGDWIAQ 198
           LTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNPVLAKMMISGVVYSLGDWIAQ
Sbjct: 139 LTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNPVLAKMMISGVVYSLGDWIAQ 198

Query: 199 CYEGKPIFEFDRARMFRSGLVGFTLHGSLSHYYYHFCEALFPFKDWWVVPAKVVFDQTAW 258
           CYEGKPIFEFDRARMFRSGLVGFTLHGSLSHYYYHFCEALFPFKDWWVVPAKVVFDQTAW
Sbjct: 199 CYEGKPIFEFDRARMFRSGLVGFTLHGSLSHYYYHFCEALFPFKDWWVVPAKVVFDQTAW 258

Query: 259 SAIWNSIYFVVLGFLRLESPATISSELKSTFWPMLTAGWKLWPFAHLVTYGLVPVEQRLL 318
           SAIWNSIYFVVLGFLRLESPATISSELKSTFWPMLTAGWKLWPFAHLVTYGLVPVEQRLL
Sbjct: 259 SAIWNSIYFVVLGFLRLESPATISSELKSTFWPMLTAGWKLWPFAHLVTYGLVPVEQRLL 318

Query: 319 WVDCVELIWVTILSTYSNEKSEAR 342
           WVDCVELIWVTILSTYSNEKSEAR
Sbjct: 319 WVDCVELIWVTILSTYSNEKSEAR 342



>Os09g0315000 Mpv17/PMP22 family protein
          Length = 88

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 69/80 (86%), Gaps = 11/80 (13%)

Query: 119 NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP 178
           NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP
Sbjct: 10  NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP 69

Query: 179 VLAKMMISGVVYSLGDWIAQ 198
           VL           LGDWIAQ
Sbjct: 70  VL-----------LGDWIAQ 78



>Os08g0566900 Mpv17/PMP22 family protein
          Length = 187

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 168 SAYEEALKTNPVLAKMMISGVVYSLGDWIAQCYEGKPIFEFDRARMFRSGLVGFTLHGSL 227
            AY   L+ +P+  K + SGV+    D IAQ   G P     R R+    L GF   G  
Sbjct: 10  QAYMRQLQAHPLRTKAITSGVLAGCSDAIAQKISGVP--NLQRRRLLLIMLYGFAYAGPF 67

Query: 228 SHYYYHFCEALFPFKDWWVVPAKVVFDQTAWSAIWNSIYFVVLGFLRLESP--ATISSEL 285
            H+ +   +  F  K      AK V  +   ++ WN++ F++   L +E    + + S+L
Sbjct: 68  GHFLHKLMDRFFKGKKGKETTAKKVLVEQLTASPWNNMMFMMYYGLVVEGRPFSQVKSKL 127

Query: 286 KSTFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILS 332
           K  +  +    WK WP    + Y  +P++ R+L+   V   W   L+
Sbjct: 128 KKDYASVQLTAWKFWPIVSWINYEYMPLQLRVLFHSFVASCWAVFLN 174



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,594,998
Number of extensions: 399233
Number of successful extensions: 734
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 256
Effective length of database: 11,709,973
Effective search space: 2997753088
Effective search space used: 2997753088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)