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Os03g0583800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mpv17/PMP22 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0223) R2 : 0.868
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.18 (0.0723) R2dC : 0.419 R2C : 0.715
β3 : -1.41 (0.0788) R2dE : 0.148 R2E : 0.45
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.124 (0.0472) R2dN8 : 0.0026 R2N8 : 0.00104
σ : 0.419
deviance : 80.84
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_____
C
peak time of C : 7.7
E
wheather : temperature
threshold : 25.3
memory length : 289
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.9
open length of G : 2.82

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.63 0.417 13.5 -0.0553 2.19 -1.39 0.9 0.0686 -0.127 7.69 25.32 291 13.9 2.87
78.63 0.413 13.5 -0.0615 2.19 -1.38 0.881 -- -0.128 7.69 25.36 292 13.9 2.81
80.65 0.418 13.5 -0.04 2.23 -1.35 -- -0.202 -0.139 7.65 25.39 288 14 2.8
80.81 0.419 13.5 -0.0391 2.17 -1.41 -- -- -0.125 7.69 25.3 290 13.9 2.82
98.61 0.463 13.6 -0.14 -- -2.8 -- -1.18 -0.189 -- -8.225 555 11.4 6.05
124.52 0.523 13.5 -0.182 3.02 -- 1.2 -- -0.239 7.23 -- -- -- --
128.4 0.531 13.5 -0.157 3.02 -- -- -- -0.242 7.22 -- -- -- --
101.28 0.469 13.6 -0.119 -- -2.86 -- -- -0.171 -- 0.1444 542 11.4 6.41
80.84 0.419 13.5 -- 2.18 -1.41 -- -- -0.124 7.7 25.3 289 13.9 2.82
610.85 1.15 13.6 -0.102 -- -- -- -- -0.19 -- -- -- -- --
129.05 0.531 13.5 -- 3.02 -- -- -- -0.224 7.22 -- -- -- --
101.6 0.469 13.6 -- -- -2.88 -- -- -0.162 -- 1.114 541 11.3 6.51
611.12 1.15 13.6 -- -- -- -- -- -0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.53 temperature 25.0 270 > th dose independent rect. 14 3
2 82.58 temperature 25.0 270 > th dose independent rect. 15 1
4 82.94 temperature 25.0 270 > th dose independent rect. 13 5
9 85.26 temperature 10.0 270 > th dose dependent rect. 13 19
11 85.36 temperature 10.0 270 > th dose dependent rect. 14 3
13 85.73 humidity 90.0 270 < th dose independent rect. 14 3
15 86.18 radiation 1.0 270 > th dose independent rect. 14 3
16 86.25 temperature 10.0 270 > th dose dependent rect. 12 21
20 87.07 wind 1.0 270 > th dose independent rect. 17 21
22 87.14 radiation 1.0 270 > th dose independent rect. 13 18
25 87.41 temperature 10.0 270 > th dose dependent rect. 13 5
27 87.51 temperature 10.0 90 > th dose dependent rect. 15 19
28 87.57 radiation 1.0 270 > th dose independent rect. 14 16
40 88.25 temperature 30.0 90 < th dose independent rect. 19 20
44 88.30 temperature 30.0 270 < th dose independent rect. 8 6
45 88.31 wind 9.0 270 < th dose independent rect. 14 3
53 88.53 temperature 10.0 270 > th dose independent rect. 14 3
55 88.53 atmosphere 1010.0 270 < th dose independent rect. 14 3
58 88.53 temperature 10.0 270 > th dose independent rect. 17 21
59 88.53 precipitation 0.1 270 < th dose independent rect. 17 21
60 88.53 precipitation 0.1 270 < th dose dependent rect. 17 21
63 88.59 temperature 10.0 10 > th dose dependent rect. 15 19
66 88.72 radiation 40.0 90 < th dose independent rect. 15 4
67 88.78 temperature 10.0 270 > th dose dependent rect. 3 15
68 88.83 wind 1.0 270 > th dose independent rect. 14 3
69 88.84 precipitation 0.1 270 < th dose independent rect. 14 3
70 88.84 precipitation 0.1 270 < th dose dependent rect. 14 3
77 88.92 temperature 10.0 90 > th dose independent rect. 19 20
82 89.11 atmosphere 995.0 90 > th dose independent rect. 19 20
85 89.18 precipitation 0.1 90 < th dose independent rect. 19 20
86 89.18 precipitation 0.1 90 < th dose dependent rect. 19 20
91 89.23 wind 9.0 270 < th dose independent rect. 13 19
93 89.32 atmosphere 995.0 270 > th dose independent rect. 17 21
94 89.37 temperature 10.0 270 > th dose independent rect. 8 5
95 89.37 atmosphere 995.0 270 > th dose independent rect. 8 5
96 89.37 atmosphere 1015.0 270 < th dose independent rect. 8 5
97 89.37 temperature 10.0 270 > th dose independent rect. 13 19
99 89.41 precipitation 0.1 270 < th dose independent rect. 8 5
100 89.41 precipitation 0.1 270 < th dose dependent rect. 8 5
105 89.58 wind 9.0 270 < th dose independent rect. 3 14
108 89.63 wind 1.0 270 > th dose independent rect. 8 5
109 89.68 wind 9.0 270 < th dose independent rect. 17 21
110 89.69 radiation 1.0 270 > th dose dependent rect. 14 17
113 89.77 radiation 30.0 270 < th dose dependent rect. 17 10
119 89.85 wind 9.0 270 < th dose independent rect. 8 5
122 89.99 wind 9.0 90 < th dose independent rect. 19 20
138 90.23 temperature 10.0 270 > th dose independent rect. 17 10
139 90.23 radiation 20.0 270 < th dose independent rect. 17 10
142 90.23 temperature 10.0 270 > th dose independent rect. 3 14
143 90.23 atmosphere 1015.0 270 < th dose independent rect. 3 14
145 90.26 atmosphere 995.0 90 > th dose independent rect. 15 4
152 90.34 wind 9.0 270 < th dose independent rect. 17 10
164 90.51 wind 1.0 270 > th dose independent rect. 7 7
179 90.58 precipitation 0.1 270 < th dose independent rect. 13 19
180 90.58 precipitation 0.1 270 < th dose dependent rect. 13 19
184 90.62 radiation 1.0 270 > th dose independent rect. 8 5
187 90.64 humidity 50.0 270 > th dose independent rect. 17 10
198 90.82 radiation 20.0 270 < th dose dependent sin 14 NA
219 90.93 wind 9.0 270 < th dose independent rect. 14 17
220 90.96 humidity 50.0 270 > th dose independent rect. 8 5
222 90.97 temperature 15.0 10 > th dose dependent rect. 15 5
228 91.08 temperature 10.0 270 > th dose independent rect. 7 7
229 91.08 atmosphere 995.0 270 > th dose independent rect. 7 7
230 91.08 atmosphere 1015.0 270 < th dose independent rect. 7 7
231 91.08 temperature 10.0 270 > th dose independent rect. 14 17
241 91.20 radiation 1.0 270 > th dose independent sin 14 NA
245 91.23 precipitation 0.1 270 < th dose independent rect. 7 7
246 91.23 precipitation 0.1 270 < th dose dependent rect. 7 7
264 91.30 radiation 1.0 270 > th dose dependent rect. 15 1
268 91.34 temperature 30.0 270 < th dose independent rect. 19 18
285 91.47 wind 1.0 270 > th dose independent rect. 18 9
291 91.52 humidity 50.0 270 > th dose independent rect. 17 21
292 91.54 atmosphere 995.0 270 > th dose independent rect. 18 9
329 91.63 atmosphere 1015.0 270 < th dose dependent rect. 14 3
331 91.65 atmosphere 995.0 270 > th dose independent rect. 13 19
336 91.69 wind 9.0 270 < th dose independent rect. 7 7
356 91.88 precipitation 0.1 270 < th dose independent rect. 17 10
358 91.88 precipitation 0.1 270 < th dose dependent rect. 17 10
368 91.91 radiation 1.0 270 < th dose independent sin 14 NA
369 91.91 precipitation 0.1 270 < th dose independent rect. 13 5
370 91.91 precipitation 0.1 270 < th dose dependent rect. 13 5
381 91.98 radiation 1.0 270 > th dose dependent sin 13 NA
387 92.03 temperature 20.0 10 > th dose independent rect. 15 5
388 92.03 radiation 1.0 270 < th dose independent rect. 15 12
389 92.03 radiation 1.0 270 < th dose independent rect. 8 19
407 92.17 wind 1.0 10 > th dose independent rect. 10 6
408 92.18 precipitation 0.1 270 < th dose independent rect. 3 14
409 92.18 precipitation 0.1 270 < th dose dependent rect. 3 14
434 92.42 precipitation 0.1 270 < th dose independent rect. 14 17
435 92.42 precipitation 0.1 270 < th dose dependent rect. 14 17
440 92.46 temperature 10.0 10 > th dose independent rect. 10 6
442 92.46 atmosphere 1015.0 10 < th dose independent rect. 10 6
443 92.46 precipitation 0.1 10 < th dose independent rect. 10 6
444 92.46 temperature 10.0 10 > th dose independent rect. 16 18
445 92.46 precipitation 0.1 10 < th dose dependent rect. 10 6
449 92.48 atmosphere 995.0 10 > th dose independent rect. 10 6
470 92.65 radiation 1.0 270 > th dose independent rect. 7 7
492 92.83 wind 9.0 10 < th dose independent rect. 16 18
499 92.88 humidity 50.0 90 > th dose independent rect. 19 20
527 93.05 radiation 40.0 90 < th dose independent rect. 15 18
559 93.20 radiation 1.0 270 < th dose dependent rect. 8 19
575 93.29 atmosphere 995.0 270 > th dose independent rect. 13 5
577 93.30 wind 1.0 270 > th dose dependent rect. 14 3
579 93.32 wind 9.0 10 < th dose independent rect. 10 6
594 93.43 atmosphere 995.0 10 > th dose independent rect. 16 18
610 93.46 precipitation 0.1 10 < th dose independent rect. 16 18
611 93.46 precipitation 0.1 10 < th dose dependent rect. 16 18
638 93.56 atmosphere 995.0 270 > th dose independent rect. 14 17
663 93.73 wind 3.0 10 > th dose independent rect. 16 3
716 94.07 atmosphere 1015.0 270 < th dose independent rect. 13 19
722 94.10 atmosphere 1015.0 90 < th dose independent rect. 19 20
745 94.19 radiation 1.0 10 > th dose independent rect. 10 5
751 94.21 wind 9.0 90 < th dose dependent rect. 15 4
752 94.22 humidity 50.0 270 > th dose independent rect. 14 3
753 94.22 atmosphere 995.0 270 > th dose independent rect. 3 14
798 94.36 radiation 40.0 270 < th dose independent rect. 8 6
851 94.57 temperature 30.0 270 < th dose independent rect. 18 9
893 94.72 temperature 10.0 1440 > th dose independent rect. 11 5
897 94.72 temperature 10.0 1440 > th dose independent rect. 16 19
906 94.75 radiation 40.0 90 < th dose dependent rect. 15 4
938 94.87 temperature 15.0 90 > th dose dependent rect. 15 8
987 95.12 atmosphere 1015.0 90 < th dose independent rect. 15 19
988 95.13 atmosphere 1015.0 10 < th dose independent rect. 16 18