Os09g0315000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mpv17/PMP22 family protein.
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Os09g0315000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mpv17/PMP22 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.2 | 0.513 | 13.4 | 0.427 | 5.01 | 2.76 | 1.73 | 1.75 | 0.216 | 6.96 | 30.1 | 392 | 15.5 | -- |
| 121.1 | 0.513 | 13.4 | 0.688 | 5.13 | 2.76 | 1.02 | -- | 0.25 | 6.91 | 30.97 | 390 | 15.6 | -- |
| 124.27 | 0.519 | 13.4 | 0.57 | 5.1 | 2.87 | -- | 1.14 | 0.186 | 6.88 | 30.9 | 458 | 16.1 | -- |
| 123.35 | 0.517 | 13.4 | 0.752 | 5.14 | 2.86 | -- | -- | 0.237 | 6.81 | 31.35 | 413 | 15.9 | -- |
| 612.83 | 1.15 | 13.4 | -1.28 | -- | 4.21 | -- | 6.66 | -0.0226 | -- | 45.08 | 2050 | 4.56 | -- |
| 211.18 | 0.681 | 13.5 | 0.0936 | 4.56 | -- | 1.87 | -- | -0.134 | 7.03 | -- | -- | -- | -- |
| 220.29 | 0.695 | 13.5 | 0.129 | 4.57 | -- | -- | -- | -0.138 | 7.02 | -- | -- | -- | -- |
| 165.69 | 0.6 | 13.5 | 0.746 | -- | 6.03 | -- | -- | 0.366 | -- | 91.9 | 2069 | 4.33 | -- |
| 135.97 | 0.543 | 13.4 | -- | 5.09 | 2.62 | -- | -- | 0.114 | 6.72 | 31.81 | 430 | 16.3 | -- |
| 1319.02 | 1.7 | 13.6 | 0.221 | -- | -- | -- | -- | -0.0547 | -- | -- | -- | -- | -- |
| 220.73 | 0.695 | 13.5 | -- | 4.57 | -- | -- | -- | -0.153 | 7.01 | -- | -- | -- | -- |
| 177.55 | 0.621 | 13.5 | -- | -- | 5.72 | -- | -- | 0.184 | -- | 115 | 2085 | 4.46 | -- |
| 1320.3 | 1.7 | 13.6 | -- | -- | -- | -- | -- | -0.0792 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 2 | 110.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 26 | 119.63 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 3 |
| 28 | 119.68 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 5 |
| 33 | 121.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 37 | 121.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 42 | 122.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 50 | 122.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 58 | 123.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 66 | 124.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 88 | 125.86 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 98 | 126.59 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 21 |
| 107 | 127.20 | temperature | 10 | 270 | > th | dose dependent | sin | 21 | NA |
| 135 | 128.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 159 | 129.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 222 | 131.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 224 | 131.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 21 |
| 260 | 131.99 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 285 | 132.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 5 |
| 318 | 133.12 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 394 | 134.19 | radiation | 40 | 270 | < th | dose dependent | sin | 13 | NA |
| 413 | 134.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 518 | 135.92 | radiation | 1 | 270 | > th | dose dependent | sin | 13 | NA |
| 534 | 136.29 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 536 | 136.32 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 6 |
| 540 | 136.35 | radiation | 10 | 270 | > th | dose independent | rect. | 14 | 18 |
| 572 | 136.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 581 | 136.92 | humidity | 90 | 270 | < th | dose independent | rect. | 14 | 3 |
| 634 | 137.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 690 | 138.23 | radiation | 10 | 270 | > th | dose independent | sin | 13 | NA |
| 707 | 138.46 | radiation | 1 | 270 | > th | dose independent | rect. | 14 | 3 |
| 739 | 138.80 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 14 | 3 |
| 767 | 139.00 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 5 |
| 831 | 139.74 | humidity | 90 | 270 | < th | dose independent | rect. | 13 | 5 |
| 869 | 140.17 | radiation | 1 | 270 | > th | dose independent | rect. | 13 | 6 |
| 899 | 140.34 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 16 |
| 971 | 141.17 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 4 |