BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0315000 Os09g0315000|009-025-A11
         (88 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0315000  Mpv17/PMP22 family protein                          167   1e-42
Os03g0583800  Mpv17/PMP22 family protein                          137   2e-33

>Os09g0315000 Mpv17/PMP22 family protein
          Length = 88

 Score =  167 bits (424), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 10 NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP 69
          NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP
Sbjct: 10 NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP 69

Query: 70 VLLGDWIAQVCKRFNFPLI 88
          VLLGDWIAQVCKRFNFPLI
Sbjct: 70 VLLGDWIAQVCKRFNFPLI 88



>Os03g0583800 Mpv17/PMP22 family protein
          Length = 358

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 69/80 (86%), Gaps = 11/80 (13%)

Query: 10  NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP 69
           NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP
Sbjct: 119 NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP 178

Query: 70  VL-----------LGDWIAQ 78
           VL           LGDWIAQ
Sbjct: 179 VLAKMMISGVVYSLGDWIAQ 198



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,757,434
Number of extensions: 90597
Number of successful extensions: 280
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 2
Length of query: 88
Length of database: 17,035,801
Length adjustment: 58
Effective length of query: 30
Effective length of database: 14,007,389
Effective search space: 420221670
Effective search space used: 420221670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)