BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0315000 Os09g0315000|009-025-A11
         (88 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52870.2  | chr1:19685856-19687678 FORWARD LENGTH=367          114   8e-27
AT4G03410.2  | chr4:1501907-1503503 FORWARD LENGTH=362            109   3e-25

>AT1G52870.2 | chr1:19685856-19687678 FORWARD LENGTH=367
          Length = 366

 Score =  114 bits (286), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 60/79 (75%), Gaps = 11/79 (13%)

Query: 11  KMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNPV 70
           KM+DR IN  IVL A +YA+TKLLT+DHDYWHGWT+FEILRY P+HNW AYEEALK NPV
Sbjct: 123 KMIDRTINATIVLAAGSYAITKLLTIDHDYWHGWTLFEILRYAPQHNWIAYEEALKQNPV 182

Query: 71  L-----------LGDWIAQ 78
           L           +GDWIAQ
Sbjct: 183 LAKMVISGVVYSVGDWIAQ 201



>AT4G03410.2 | chr4:1501907-1503503 FORWARD LENGTH=362
          Length = 361

 Score =  109 bits (272), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 60/80 (75%), Gaps = 11/80 (13%)

Query: 10  NKMLDRGINTAIVLGASTYALTKLLTVDHDYWHGWTIFEILRYMPEHNWSAYEEALKTNP 69
           ++++ RGIN AIVL A T A+TKLLT+DHDYW GWT++EILRY PEHNW AYE+ LKTNP
Sbjct: 80  DRLMSRGINAAIVLAAGTVAVTKLLTIDHDYWQGWTLYEILRYAPEHNWFAYEQILKTNP 139

Query: 70  VL-----------LGDWIAQ 78
           VL           LGDWIAQ
Sbjct: 140 VLAKMAISGIVYSLGDWIAQ 159



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.139    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,806,295
Number of extensions: 60753
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 2
Length of query: 88
Length of database: 11,106,569
Length adjustment: 59
Effective length of query: 29
Effective length of database: 9,489,025
Effective search space: 275181725
Effective search space used: 275181725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)