BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0445700 Os03g0445700|AK071624
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0445700 Similar to LOB domain protein 39 376 e-105
Os07g0589000 Lateral organ boundaries, LOB domain containin... 248 2e-66
Os03g0609500 Similar to LOB domain protein 39 179 8e-46
Os01g0129600 Lateral organ boundaries, LOB domain containin... 172 1e-43
Os01g0511000 Similar to LOB domain protein 40 160 8e-40
>Os03g0445700 Similar to LOB domain protein 39
Length = 204
Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/204 (92%), Positives = 189/204 (92%)
Query: 1 MSCNGCRVLRKGCSDGCVLRPCLQWIDAADAQGHATVFVAKFFGRAGLLSFISAVPEAQR 60
MSCNGCRVLRKGCSDGCVLRPCLQWIDAADAQGHATVFVAKFFGRAGLLSFISAVPEAQR
Sbjct: 1 MSCNGCRVLRKGCSDGCVLRPCLQWIDAADAQGHATVFVAKFFGRAGLLSFISAVPEAQR 60
Query: 61 PALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQAAVETVLRGGAIGPLPELXXXXXXX 120
PALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQAAVETVLRGGAIGPLPEL
Sbjct: 61 PALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQAAVETVLRGGAIGPLPELGGACGGA 120
Query: 121 XXXXXXXXKRNGGWSTFSTAKRVRKAEVPEAPSCDLGLCLSPGSPPAVGERKPALRPGTP 180
KRNGGWSTFSTAKRVRKAEVPEAPSCDLGLCLSPGSPPAVGERKPALRPGTP
Sbjct: 121 GGDLYGAAKRNGGWSTFSTAKRVRKAEVPEAPSCDLGLCLSPGSPPAVGERKPALRPGTP 180
Query: 181 SMSSDESGTTTGGERDPVLLNLFV 204
SMSSDESGTTTGGERDPVLLNLFV
Sbjct: 181 SMSSDESGTTTGGERDPVLLNLFV 204
>Os07g0589000 Lateral organ boundaries, LOB domain containing protein
Length = 226
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/226 (63%), Positives = 158/226 (69%), Gaps = 22/226 (9%)
Query: 1 MSCNGCRVLRKGCSDGCVLRPCLQWIDAADAQGHATVFVAKFFGRAGLLSFISAVPEAQR 60
MSCNGCRVLRKGCS+GCVLRPCLQWID A+AQGHATVFVAKFFGRAGL+SF++AVPE QR
Sbjct: 1 MSCNGCRVLRKGCSEGCVLRPCLQWIDGAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQR 60
Query: 61 PALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQAAVETVLRGGAIGPLPELXXXXXXX 120
A+FQSLLYEAAGRTINPV GAVGLL G+W LCQAAV+TVLRGG I PLP+
Sbjct: 61 AAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLCQAAVDTVLRGGGIQPLPDQVDAAAAG 120
Query: 121 XXXXXXXXKRN--GGWSTFSTAKR------VRKAEVPE---------APSCDLGLCLSPG 163
R GG STFSTAKR + P PSCDLGL LSPG
Sbjct: 121 GRDVFASTARRAMGGCSTFSTAKRSTTTTTTKNPGTPHDAAAAAPQPEPSCDLGLWLSPG 180
Query: 164 SPPAVGERKP-ALRPGTPSMSSDESGTTTG----GERDPVLLNLFV 204
SPPA G+R+ R TPSM+S+ S TT G GER+P LLNLFV
Sbjct: 181 SPPAPGDRRSGGRRADTPSMNSEGSVTTCGVVGDGEREPELLNLFV 226
>Os03g0609500 Similar to LOB domain protein 39
Length = 232
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 129/237 (54%), Gaps = 40/237 (16%)
Query: 1 MSCNGCRVLRKGCSDGCVLRPCLQWIDAADAQGHATVFVAKFFGRAGLLSFISAVPEAQR 60
MSCNGCRVLRKGCSD CVLRP ++WID A Q +ATVFVAKFFGRAGL++ ++AVP R
Sbjct: 1 MSCNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHR 60
Query: 61 PALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQAAVETVLRGGAIGPLPELXXXXXX- 119
PALF+SLLYEA GRTINPV GA+GL+WTGNW LCQAA + VLRG ++ L +
Sbjct: 61 PALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRGDSLRALSAVPAAFTDR 120
Query: 120 --------------------------XXXXXXXXXKRNGGWSTFSTAKRVRKAEVPEAPS 153
RN G +++ A S
Sbjct: 121 DMAGLYGNVGAAAGTSSSSPDNDNSSASAAPRRKRPRNNGAGAGVGQQQLPHAVAAVLQS 180
Query: 154 CDLGLCLSPGSPPAVGERKPALRPGTPSMSSDESGTTT-------GGERDPVLLNLF 203
C+L LCL+P SPPAV G +SDE TTT G P LLNLF
Sbjct: 181 CELDLCLTPVSPPAV------QLVGGGGGASDEHSTTTCEEASDGDGAGAPTLLNLF 231
>Os01g0129600 Lateral organ boundaries, LOB domain containing protein
Length = 307
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 94/111 (84%)
Query: 1 MSCNGCRVLRKGCSDGCVLRPCLQWIDAADAQGHATVFVAKFFGRAGLLSFISAVPEAQR 60
MSCNGCRVLRKGCSD C +RPCLQWI + DAQ +ATVF+AKF+GRAGL++ I+A PE R
Sbjct: 3 MSCNGCRVLRKGCSDNCAIRPCLQWIRSPDAQANATVFLAKFYGRAGLINLITAGPEHVR 62
Query: 61 PALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQAAVETVLRGGAIGPLP 111
PA+F+SLLYEA GR +NPV+G+VGLLW+GNW LCQ+AVE+VLRG I P
Sbjct: 63 PAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQSAVESVLRGMPIAQPP 113
>Os01g0511000 Similar to LOB domain protein 40
Length = 186
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 71/104 (68%), Positives = 89/104 (85%)
Query: 1 MSCNGCRVLRKGCSDGCVLRPCLQWIDAADAQGHATVFVAKFFGRAGLLSFISAVPEAQR 60
MSCNGCRVLRKGCS+GC +RPCLQWI +AQ +ATVF+AKF+GRAGLL+ ++A P+ R
Sbjct: 3 MSCNGCRVLRKGCSEGCTIRPCLQWIKTPEAQANATVFLAKFYGRAGLLNLLAAGPDHLR 62
Query: 61 PALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQAAVETVLRG 104
PA+F+SLLYEA GR +NP++G+VGLLW+G W CQAAVE VL+G
Sbjct: 63 PAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQACQAAVEAVLKG 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,815,895
Number of extensions: 326829
Number of successful extensions: 1064
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1071
Number of HSP's successfully gapped: 5
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)