Os01g0511000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LOB domain protein 40.
FiT-DB / Search/ Help/ Sample detail
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Os01g0511000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LOB domain protein 40.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 939.64 | 1.44 | 8.61 | -0.574 | 5.02 | 8.48 | -2.9 | -2.5 | -0.637 | 8.6 | 0.5542 | 37 | 8.2 | -- |
| 944.79 | 1.43 | 8.69 | -0.642 | 5.05 | 8.58 | -0.58 | -- | -0.764 | 8.6 | 0.6 | 39 | 8.31 | -- |
| 945 | 1.43 | 8.61 | -0.709 | 4.99 | 8.44 | -- | -0.488 | -0.631 | 8.56 | 0.6116 | 37 | 8.24 | -- |
| 942.86 | 1.43 | 8.64 | -0.67 | 4.99 | 8.54 | -- | -- | -0.675 | 8.67 | 0.66 | 39 | 8.2 | -- |
| 1374.23 | 1.73 | 8.72 | -0.936 | -- | 5.48 | -- | -1.28 | -0.567 | -- | 0.787 | 68 | 6.61 | -- |
| 1797.62 | 1.99 | 8.84 | -1.23 | 5.67 | -- | -0.673 | -- | -0.741 | 1.3 | -- | -- | -- | -- |
| 1799.48 | 1.99 | 8.83 | -1.2 | 5.67 | -- | -- | -- | -0.737 | 1.3 | -- | -- | -- | -- |
| 1360.94 | 1.72 | 8.72 | -0.989 | -- | 5.46 | -- | -- | -0.485 | -- | 1.1 | 66 | 6.36 | -- |
| 955.98 | 1.44 | 8.61 | -- | 4.96 | 8.44 | -- | -- | -0.568 | 8.58 | 0.6003 | 39 | 8.27 | -- |
| 3786.08 | 2.88 | 8.75 | -0.982 | -- | -- | -- | -- | -0.62 | -- | -- | -- | -- | -- |
| 1837.64 | 2.01 | 8.8 | -- | 5.65 | -- | -- | -- | -0.603 | 1.29 | -- | -- | -- | -- |
| 1384.77 | 1.73 | 8.71 | -- | -- | 5.47 | -- | -- | -0.414 | -- | 1.052 | 60 | 6.33 | -- |
| 3811.52 | 2.88 | 8.73 | -- | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 972.03 | radiation | 1.0 | 30 | < th | dose dependent | sin | 14 | NA |
| 4 | 1027.59 | radiation | 1.0 | 90 | < th | dose independent | sin | 14 | NA |
| 5 | 1029.99 | radiation | 1.0 | 90 | > th | dose independent | sin | 14 | NA |
| 6 | 1031.47 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 12 | 1053.24 | temperature | 30.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 20 | 1077.09 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 18 | 20 |
| 26 | 1081.05 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 18 | 18 |
| 29 | 1083.53 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 18 | 14 |
| 41 | 1094.76 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 43 | 1096.02 | radiation | 1.0 | 30 | < th | dose dependent | no | NA | NA |
| 44 | 1096.02 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 50 | 1096.02 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 51 | 1096.02 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 55 | 1099.13 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 68 | 1102.53 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 18 | 12 |
| 79 | 1107.00 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 93 | 1109.15 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 128 | 1121.30 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 20 |
| 138 | 1124.54 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 22 |
| 139 | 1125.51 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 16 |
| 169 | 1131.48 | humidity | 60.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 214 | 1139.62 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 12 |
| 257 | 1158.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 261 | 1158.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 269 | 1161.17 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 13 |
| 270 | 1161.17 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 273 | 1166.02 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 22 |
| 291 | 1175.77 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 23 |
| 298 | 1178.88 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 14 |
| 299 | 1179.39 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 14 | 4 |
| 302 | 1179.93 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 305 | 1180.26 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 310 | 1181.02 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 311 | 1181.02 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 393 | 1185.04 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 411 | 1187.47 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 434 | 1196.71 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 484 | 1209.36 | temperature | 10.0 | 90 | > th | dose independent | rect. | 18 | 11 |
| 486 | 1209.36 | radiation | 20.0 | 90 | < th | dose independent | rect. | 18 | 11 |
| 489 | 1209.36 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 13 |
| 490 | 1209.36 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 493 | 1209.71 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 18 | 11 |
| 501 | 1212.07 | wind | 9.0 | 90 | < th | dose independent | rect. | 18 | 11 |
| 541 | 1220.93 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 569 | 1224.62 | humidity | 90.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 679 | 1230.64 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 703 | 1233.32 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 4 |
| 704 | 1233.32 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 4 |
| 708 | 1234.26 | temperature | 25.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 709 | 1234.34 | wind | 1.0 | 90 | > th | dose independent | rect. | 18 | 11 |
| 781 | 1244.50 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 792 | 1246.57 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 806 | 1248.31 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 809 | 1249.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 811 | 1249.43 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 816 | 1250.07 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 835 | 1252.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 1 |
| 836 | 1252.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 844 | 1254.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 846 | 1254.20 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 848 | 1254.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 864 | 1256.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 865 | 1257.40 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 3 |
| 874 | 1259.50 | wind | 1.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 879 | 1259.96 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 18 | 11 |
| 880 | 1259.96 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 18 | 11 |
| 887 | 1261.01 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 5 |
| 889 | 1261.23 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 892 | 1263.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 898 | 1265.28 | temperature | 10.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 900 | 1265.28 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 902 | 1265.28 | temperature | 10.0 | 90 | > th | dose independent | rect. | 18 | 20 |
| 903 | 1265.59 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 18 | 20 |
| 932 | 1270.43 | wind | 9.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 937 | 1271.61 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 938 | 1271.70 | wind | 9.0 | 90 | < th | dose independent | rect. | 18 | 20 |
| 941 | 1273.42 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 13 |
| 976 | 1279.88 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 978 | 1280.32 | radiation | 1.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 979 | 1280.77 | radiation | 1.0 | 90 | > th | dose independent | rect. | 11 | 23 |
| 981 | 1281.02 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 988 | 1283.51 | wind | 1.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 994 | 1284.76 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 16 | 15 |