Os03g0445700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LOB domain protein 39.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0445700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to LOB domain protein 39.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.61 | 0.761 | 4.5 | -4.02 | 1.81 | 0.351 | -4.3 | -9.39 | -0.585 | 3.97 | 3.084 | 729 | 17.1 | 1.07 |
| 333.52 | 0.851 | 4.55 | -3.44 | 1.95 | 1.11 | -6.14 | -- | -0.657 | 2.99 | 4.221 | 2862 | 17.3 | 1.13 |
| 292.77 | 0.797 | 4.53 | -4.01 | 1.68 | 0.767 | -- | -8.9 | -0.657 | 4.51 | 2.275 | 833 | 17.2 | 1.87 |
| 441.52 | 0.979 | 4.48 | -3.66 | 1.75 | 2.23 | -- | -- | -0.452 | 4.31 | 3.896 | 826 | 17.2 | 0.9 |
| 361.82 | 0.886 | 4.49 | -3.79 | -- | 2.03 | -- | -9.05 | -0.573 | -- | 1.661 | 847 | 17.2 | 2.25 |
| 349.26 | 0.876 | 4.67 | -4.17 | 1.93 | -- | -6.84 | -- | -0.788 | 2.7 | -- | -- | -- | -- |
| 506.71 | 1.05 | 4.63 | -4.01 | 1.97 | -- | -- | -- | -0.751 | 3.32 | -- | -- | -- | -- |
| 493.71 | 1.03 | 4.65 | -3.83 | -- | 2.29 | -- | -- | -0.77 | -- | -3.096 | 732 | 18.8 | 3.99 |
| 668.15 | 1.2 | 4.45 | -- | 2.02 | 3.5 | -- | -- | -0.58 | 4.28 | 4.581 | 6620 | 17.1 | 0.533 |
| 725.18 | 1.26 | 4.63 | -3.92 | -- | -- | -- | -- | -0.699 | -- | -- | -- | -- | -- |
| 930.17 | 1.43 | 4.53 | -- | 1.89 | -- | -- | -- | -0.304 | 3.33 | -- | -- | -- | -- |
| 727.13 | 1.26 | 4.36 | -- | -- | 3.8 | -- | -- | 0.0438 | -- | 5 | 46906 | 17.2 | 0.417 |
| 1131.55 | 1.57 | 4.53 | -- | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.84 | wind | 5 | 720 | > th | dose independent | rect. | 17 | 2 |
| 2 | 270.63 | wind | 3 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 12 | 280.83 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 12 |
| 14 | 281.43 | temperature | 25 | 270 | > th | dose independent | sin | 15 | NA |
| 21 | 282.46 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 13 |
| 32 | 283.01 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 39 | 284.49 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 76 | 287.79 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 87 | 287.85 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 90 | 287.90 | temperature | 25 | 90 | < th | dose independent | sin | 14 | NA |
| 97 | 288.41 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 120 | 289.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 121 | 289.50 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 124 | 289.61 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 130 | 289.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 140 | 289.94 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 14 |
| 141 | 289.95 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 5 |
| 144 | 289.98 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 158 | 290.33 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 8 |
| 163 | 290.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 224 | 291.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 277 | 292.75 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 286 | 292.96 | radiation | 1 | 720 | < th | dose independent | sin | 0 | NA |
| 332 | 294.14 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 7 |
| 337 | 294.22 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 385 | 294.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 448 | 295.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 17 |
| 451 | 295.73 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 479 | 296.27 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 17 |
| 483 | 296.34 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 17 |
| 546 | 296.85 | wind | 1 | 720 | > th | dose dependent | sin | 18 | NA |
| 581 | 297.47 | radiation | 20 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 635 | 298.00 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 6 |
| 658 | 298.32 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 11 |
| 712 | 298.74 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 22 |
| 745 | 299.06 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 1 |
| 746 | 299.08 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 9 |
| 752 | 299.17 | wind | 3 | 720 | > th | dose independent | rect. | 10 | 10 |
| 790 | 299.60 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 864 | 300.06 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 876 | 300.12 | wind | 5 | 720 | < th | dose independent | rect. | 17 | 2 |
| 884 | 300.17 | wind | 3 | 720 | > th | dose independent | rect. | 10 | 12 |
| 937 | 300.61 | wind | 5 | 720 | < th | dose independent | rect. | 13 | 18 |
| 966 | 300.83 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 980 | 300.96 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 994 | 301.04 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 3 |