BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0439800 Os03g0439800|AK066154
(90 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0439800 Conserved hypothetical protein 179 4e-46
Os06g0310300 Hypothetical protein 110 3e-25
Os07g0217000 91 2e-19
Os07g0114300 Conserved hypothetical protein 75 2e-14
Os08g0291400 72 8e-14
Os08g0206200 70 4e-13
Os05g0294900 68 2e-12
Os01g0509700 Hypothetical protein 66 6e-12
Os08g0190501 62 7e-11
>Os03g0439800 Conserved hypothetical protein
Length = 90
Score = 179 bits (454), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MGGGNGQKSRMARERNMEKAKGAKGSQLETNKKAMNIQVIFRGTFWARQWSLLLKEEDGQ 60
MGGGNGQKSRMARERNMEKAKGAKGSQLETNKKAMNIQVIFRGTFWARQWSLLLKEEDGQ
Sbjct: 1 MGGGNGQKSRMARERNMEKAKGAKGSQLETNKKAMNIQVIFRGTFWARQWSLLLKEEDGQ 60
Query: 61 KVREGCLILEKRVSGFFAMKGWNLRKRLGD 90
KVREGCLILEKRVSGFFAMKGWNLRKRLGD
Sbjct: 61 KVREGCLILEKRVSGFFAMKGWNLRKRLGD 90
>Os06g0310300 Hypothetical protein
Length = 53
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 38 QVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRLGD 90
QVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRLGD
Sbjct: 1 QVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRLGD 53
>Os07g0217000
Length = 953
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 49/52 (94%)
Query: 37 IQVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRL 88
++VIFRGTFWA+QWS LLKEEDGQ+V++G +ILEKRVS FFAM+GWNLR+RL
Sbjct: 900 LKVIFRGTFWAKQWSSLLKEEDGQRVKDGWMILEKRVSSFFAMRGWNLRRRL 951
>Os07g0114300 Conserved hypothetical protein
Length = 77
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1 MGGGNGQKSRMARERNMEKAKGAKGSQLETNKKAMNIQV-IFRGTFWARQWSLLLKEE 57
MGGGNGQKS+MARERNMEK KGAKGSQLE NKKAMNIQ I TF KE
Sbjct: 1 MGGGNGQKSKMARERNMEKNKGAKGSQLEANKKAMNIQCKICMQTFICTTSETKCKEH 58
>Os08g0291400
Length = 421
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 37 IQVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRL 88
VIFRGT+WARQWSLLLKE++ ++EGC +LE V FF GWN+RKRL
Sbjct: 364 FSVIFRGTYWARQWSLLLKEDECDVMKEGCKLLETSVMHFFGKDGWNMRKRL 415
>Os08g0206200
Length = 658
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 39/50 (78%)
Query: 39 VIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRL 88
VIFRGTFWA +WSLLLKEE+GQ V++GC LE + FF+ GWN R+RL
Sbjct: 607 VIFRGTFWALEWSLLLKEEEGQHVKDGCKKLETTMLDFFSKFGWNQRRRL 656
>Os05g0294900
Length = 571
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 38 QVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRL 88
+VIF GT WAR WSLLLK D + V+ C +LEKRV FF++ GWNLR+RL
Sbjct: 519 KVIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKRVVEFFSVYGWNLRRRL 569
>Os01g0509700 Hypothetical protein
Length = 56
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 36 NIQVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRL 88
+ +IF GT WAR WSLLLK D + V+ C +LEK V FF++ GWNLR+RL
Sbjct: 2 TVNIIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRL 54
>Os08g0190501
Length = 150
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 44 TFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRL 88
TFWAR+WSLLLKEE+GQ V++GC LE + FFA GWN R+RL
Sbjct: 104 TFWAREWSLLLKEEEGQHVKDGCKKLETTMLDFFAKFGWNQRRRL 148
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,200,302
Number of extensions: 108575
Number of successful extensions: 361
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 17,035,801
Length adjustment: 60
Effective length of query: 30
Effective length of database: 13,902,961
Effective search space: 417088830
Effective search space used: 417088830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)