Os03g0439800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0439800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.64 | 0.334 | 10.9 | -1.3 | 1.31 | -1.8 | 0.273 | -1.57 | -0.158 | 7.36 | 21.84 | 15 | -- | -- |
| 52.77 | 0.338 | 10.9 | -1.08 | 1.31 | -1.87 | 0.376 | -- | -0.105 | 7.31 | 22.03 | 18 | -- | -- |
| 50.67 | 0.332 | 10.9 | -1.28 | 1.31 | -1.79 | -- | -1.5 | -0.16 | 7.38 | 22.2 | 13 | -- | -- |
| 52.49 | 0.337 | 10.9 | -1.06 | 1.28 | -1.93 | -- | -- | -0.102 | 7.46 | 22.94 | 14 | -- | -- |
| 101.49 | 0.469 | 10.9 | -0.929 | -- | -2.28 | -- | 0.0808 | -0.0363 | -- | 23.87 | 248 | -- | -- |
| 108.41 | 0.488 | 11 | -1.44 | 1.68 | -- | 1.09 | -- | -0.391 | 5.73 | -- | -- | -- | -- |
| 111.3 | 0.494 | 11 | -1.43 | 1.69 | -- | -- | -- | -0.395 | 5.79 | -- | -- | -- | -- |
| 100.82 | 0.468 | 11 | -0.977 | -- | -2.37 | -- | -- | -0.0977 | -- | 23.88 | 249 | -- | -- |
| 79.23 | 0.415 | 10.9 | -- | 1.21 | -2.24 | -- | -- | 0.0813 | 7.77 | 21.46 | 46 | -- | -- |
| 259.35 | 0.753 | 11 | -1.38 | -- | -- | -- | -- | -0.355 | -- | -- | -- | -- | -- |
| 165.29 | 0.601 | 11 | -- | 1.67 | -- | -- | -- | -0.236 | 5.83 | -- | -- | -- | -- |
| 124.68 | 0.52 | 10.9 | -- | -- | -2.53 | -- | -- | 0.0629 | -- | 23.35 | 253 | -- | -- |
| 309.52 | 0.821 | 11 | -- | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.91 | temperature | 15 | 10 | > th | dose dependent | sin | 23 | NA |
| 18 | 45.36 | temperature | 30 | 30 | < th | dose dependent | sin | 23 | NA |
| 47 | 48.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 52 | 49.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 61 | 49.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 82 | 50.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 87 | 51.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 96 | 51.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 120 | 52.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 123 | 52.46 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 143 | 52.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 150 | 53.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 161 | 53.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 173 | 53.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 220 | 53.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 241 | 53.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 249 | 54.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 293 | 54.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 436 | 55.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 447 | 56.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 478 | 56.47 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 500 | 56.58 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 647 | 57.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 648 | 57.74 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 656 | 57.81 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 665 | 57.91 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 671 | 57.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 702 | 58.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 708 | 58.39 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 18 |
| 723 | 58.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 772 | 58.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 789 | 58.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 807 | 59.03 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 11 |
| 833 | 59.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 844 | 59.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 861 | 59.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 871 | 59.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 900 | 59.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 937 | 59.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 964 | 60.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 970 | 60.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 977 | 60.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 992 | 60.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |