Os01g0509700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0509700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.48 | 0.246 | 9.72 | -0.457 | 0.58 | -0.733 | -0.506 | -2.17 | 0.142 | 0.575 | 29.14 | 5450 | -- | -- |
| 31.26 | 0.26 | 9.8 | -0.872 | 0.611 | -0.514 | -0.411 | -- | 0.0533 | 0.608 | 34.6 | 4776 | -- | -- |
| 28.37 | 0.248 | 9.72 | -0.472 | 0.587 | -0.865 | -- | -2.45 | 0.126 | 0.557 | 25.26 | 5697 | -- | -- |
| 32.02 | 0.264 | 9.8 | -0.871 | 0.598 | -0.537 | -- | -- | 0.0482 | 0.75 | 121.9 | 4986 | -- | -- |
| 49.44 | 0.327 | 9.71 | -0.454 | -- | -0.844 | -- | -2.26 | 0.134 | -- | 29.4 | 5340 | -- | -- |
| 36.2 | 0.282 | 9.77 | -0.636 | 0.619 | -- | -0.416 | -- | 0.152 | 0.631 | -- | -- | -- | -- |
| 36.94 | 0.285 | 9.77 | -0.621 | 0.621 | -- | -- | -- | 0.154 | 0.676 | -- | -- | -- | -- |
| 48.33 | 0.324 | 9.79 | -0.849 | -- | -0.88 | -- | -- | 0.0182 | -- | 161.8 | 978 | -- | -- |
| 46.29 | 0.317 | 9.76 | -- | 0.588 | -0.207 | -- | -- | 0.193 | 0.587 | 122 | 1240 | -- | -- |
| 61.05 | 0.365 | 9.76 | -0.598 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 47.09 | 0.321 | 9.76 | -- | 0.611 | -- | -- | -- | 0.223 | 0.628 | -- | -- | -- | -- |
| 65.14 | 0.376 | 9.76 | -- | -- | -0.541 | -- | -- | 0.159 | -- | 132.7 | 958 | -- | -- |
| 70.5 | 0.392 | 9.75 | -- | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 5 | 26.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 17 | 26.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 21 |
| 18 | 26.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 58 | 26.33 | radiation | 1 | 14400 | < th | dose dependent | sin | 21 | NA |
| 107 | 26.40 | radiation | 1 | 14400 | < th | dose independent | sin | 20 | NA |
| 191 | 26.47 | radiation | 1 | 14400 | > th | dose independent | sin | 20 | NA |
| 319 | 26.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 357 | 26.59 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 415 | 26.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 417 | 26.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 477 | 26.69 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 597 | 26.92 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 663 | 26.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 684 | 26.96 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 692 | 26.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 703 | 26.99 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 772 | 27.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 12 | 23 |