BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0509700 Os01g0509700|AK105301
(56 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0509700 Hypothetical protein 117 2e-27
Os05g0294900 108 7e-25
Os10g0361825 84 3e-17
Os05g0303900 72 6e-14
Os11g0311900 70 3e-13
Os03g0439800 Conserved hypothetical protein 66 6e-12
Os08g0206200 63 4e-11
Os06g0310300 Hypothetical protein 63 4e-11
Os08g0291400 62 8e-11
>Os01g0509700 Hypothetical protein
Length = 56
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 STVNIIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRLEA 56
STVNIIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRLEA
Sbjct: 1 STVNIIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRLEA 56
>Os05g0294900
Length = 571
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/52 (96%), Positives = 51/52 (98%)
Query: 5 IIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRLEA 56
+IFMGTHWARTWSLLLKGTDEEIVKNYCKVLEK VVEFFSVYGWNLRRRLEA
Sbjct: 520 VIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKRVVEFFSVYGWNLRRRLEA 571
>Os10g0361825
Length = 192
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/52 (73%), Positives = 45/52 (86%)
Query: 5 IIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRLEA 56
+IFMGT WARTW LLLKG DEE+VK+YCK+LEK +EFFS+YG N+RR LEA
Sbjct: 135 VIFMGTLWARTWPLLLKGVDEEMVKSYCKLLEKRALEFFSMYGGNIRRILEA 186
>Os05g0303900
Length = 1196
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/33 (96%), Positives = 33/33 (100%)
Query: 5 IIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEK 37
+IFMGTHWARTWSLLLKGTDEEIVKNYCKVLEK
Sbjct: 1127 VIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEK 1159
>Os11g0311900
Length = 244
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 33/37 (89%)
Query: 3 VNIIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHV 39
+IFM THWARTWSLLLKGTDEEIVKNYCKVLEK V
Sbjct: 138 AKVIFMETHWARTWSLLLKGTDEEIVKNYCKVLEKLV 174
>Os03g0439800 Conserved hypothetical protein
Length = 90
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 2 TVNIIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRL 54
+ +IF GT WAR WSLLLK D + V+ C +LEK V FF++ GWNLR+RL
Sbjct: 36 NIQVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRL 88
>Os08g0206200
Length = 658
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 5 IIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRLEA 56
+IF GT WA WSLLLK + + VK+ CK LE +++FFS +GWN RRRLEA
Sbjct: 607 VIFRGTFWALEWSLLLKEEEGQHVKDGCKKLETTMLDFFSKFGWNQRRRLEA 658
>Os06g0310300 Hypothetical protein
Length = 53
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 4 NIIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRL 54
+IF GT WAR WSLLLK D + V+ C +LEK V FF++ GWNLR+RL
Sbjct: 1 QVIFRGTFWARQWSLLLKEEDGQKVREGCLILEKRVSGFFAMKGWNLRKRL 51
>Os08g0291400
Length = 421
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 39/52 (75%)
Query: 4 NIIFMGTHWARTWSLLLKGTDEEIVKNYCKVLEKHVVEFFSVYGWNLRRRLE 55
++IF GT+WAR WSLLLK + +++K CK+LE V+ FF GWN+R+RL+
Sbjct: 365 SVIFRGTYWARQWSLLLKEDECDVMKEGCKLLETSVMHFFGKDGWNMRKRLK 416
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,890,280
Number of extensions: 54513
Number of successful extensions: 254
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 10
Length of query: 56
Length of database: 17,035,801
Length adjustment: 29
Effective length of query: 27
Effective length of database: 15,521,595
Effective search space: 419083065
Effective search space used: 419083065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)