Os07g0114300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0114300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.28 | 0.302 | 15.3 | -0.915 | 0.749 | 0.769 | 0.32 | -0.296 | -0.0609 | 8.07 | 21.4 | 1854 | -- | -- |
| 41.48 | 0.3 | 15.3 | -0.834 | 0.748 | 0.786 | 0.353 | -- | -0.0438 | 8.06 | 21.4 | 1845 | -- | -- |
| 41.49 | 0.3 | 15.3 | -0.923 | 0.75 | 0.756 | -- | -0.358 | -0.0677 | 8.04 | 21.53 | 1857 | -- | -- |
| 41.77 | 0.301 | 15.2 | -0.823 | 0.749 | 0.777 | -- | -- | -0.0442 | 8.03 | 21.52 | 1834 | -- | -- |
| 70.49 | 0.391 | 15.3 | -0.872 | -- | 0.757 | -- | -0.302 | -0.0479 | -- | 21.7 | 1527 | -- | -- |
| 59.55 | 0.362 | 15.2 | -0.48 | 0.724 | -- | 0.312 | -- | 0.189 | 8.06 | -- | -- | -- | -- |
| 59.84 | 0.362 | 15.2 | -0.472 | 0.724 | -- | -- | -- | 0.189 | 8.01 | -- | -- | -- | -- |
| 70.74 | 0.392 | 15.3 | -0.794 | -- | 0.79 | -- | -- | -0.019 | -- | 21.6 | 1546 | -- | -- |
| 55.3 | 0.346 | 15.2 | -- | 0.705 | 0.503 | -- | -- | 0.087 | 8.21 | 22.3 | 1518 | -- | -- |
| 88.5 | 0.44 | 15.2 | -0.465 | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
| 65.71 | 0.379 | 15.2 | -- | 0.721 | -- | -- | -- | 0.241 | 8.06 | -- | -- | -- | -- |
| 81.36 | 0.421 | 15.2 | -- | -- | 0.433 | -- | -- | 0.134 | -- | 22.3 | 1503 | -- | -- |
| 94.2 | 0.453 | 15.2 | -- | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.89 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 3 | 40.02 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 9 | 40.25 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 22 | 40.65 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 25 | 40.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 42 | 41.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 43 | 41.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 46 | 41.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 54 | 41.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 67 | 41.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 108 | 41.68 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 112 | 41.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 115 | 41.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 124 | 41.75 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 188 | 42.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 232 | 42.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 254 | 42.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 295 | 42.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 475 | 42.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 574 | 43.04 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 575 | 43.04 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 584 | 43.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 604 | 43.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 616 | 43.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 629 | 43.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 630 | 43.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 632 | 43.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 650 | 43.19 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 22 |
| 651 | 43.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 664 | 43.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 774 | 43.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 824 | 43.42 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 837 | 43.43 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 864 | 43.46 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 899 | 43.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 910 | 43.51 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 920 | 43.52 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 16 |
| 924 | 43.53 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 941 | 43.54 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 951 | 43.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |