BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0114300 Os07g0114300|AK062043
         (77 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0114300  Conserved hypothetical protein                      157   2e-39
Os03g0439800  Conserved hypothetical protein                       75   2e-14

>Os07g0114300 Conserved hypothetical protein
          Length = 77

 Score =  157 bits (396), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MGGGNGQKSKMARERNMEKNKGAKGSQLEANKKAMNIQCKICMQTFICTTSETKCKEHAE 60
          MGGGNGQKSKMARERNMEKNKGAKGSQLEANKKAMNIQCKICMQTFICTTSETKCKEHAE
Sbjct: 1  MGGGNGQKSKMARERNMEKNKGAKGSQLEANKKAMNIQCKICMQTFICTTSETKCKEHAE 60

Query: 61 AKHPKSDLTACFPHLKK 77
          AKHPKSDLTACFPHLKK
Sbjct: 61 AKHPKSDLTACFPHLKK 77



>Os03g0439800 Conserved hypothetical protein
          Length = 90

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 1  MGGGNGQKSKMARERNMEKNKGAKGSQLEANKKAMNIQCKICMQTFICTTSETKCKEH 58
          MGGGNGQKS+MARERNMEK KGAKGSQLE NKKAMNIQ  I   TF         KE 
Sbjct: 1  MGGGNGQKSRMARERNMEKAKGAKGSQLETNKKAMNIQV-IFRGTFWARQWSLLLKEE 57



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.124    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,727,057
Number of extensions: 82003
Number of successful extensions: 201
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 2
Length of query: 77
Length of database: 17,035,801
Length adjustment: 48
Effective length of query: 29
Effective length of database: 14,529,529
Effective search space: 421356341
Effective search space used: 421356341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)