BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0114300 Os07g0114300|AK062043
         (77 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23090.1  | chr2:9829657-9830274 REVERSE LENGTH=79             132   4e-32

>AT2G23090.1 | chr2:9829657-9830274 REVERSE LENGTH=79
          Length = 78

 Score =  132 bits (332), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 70/78 (89%), Gaps = 1/78 (1%)

Query: 1  MGGGNGQKSKMARERNMEKNKGA-KGSQLEANKKAMNIQCKICMQTFICTTSETKCKEHA 59
          MGGGN QKS MAR +N+EK K A KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 60 EAKHPKSDLTACFPHLKK 77
          EAKHPK+D+ ACFPHLKK
Sbjct: 61 EAKHPKADVVACFPHLKK 78



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.124    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,743,869
Number of extensions: 54790
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 77
Length of database: 11,106,569
Length adjustment: 49
Effective length of query: 28
Effective length of database: 9,763,185
Effective search space: 273369180
Effective search space used: 273369180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)