BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0425800 Os03g0425800|AK100427
         (520 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0425800  Similar to MYBY2 protein (Fragment)                 983   0.0  
Os04g0166400  AT-rich interaction region domain containing p...   107   2e-23
Os10g0446400  Conserved hypothetical protein                       81   2e-15
Os01g0852500  ELM2 domain containing protein                       68   2e-11

>Os03g0425800 Similar to MYBY2 protein (Fragment)
          Length = 520

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/520 (93%), Positives = 488/520 (93%)

Query: 1   MVFSHNKNSNQFDPLSYVNLSGLDADSQSVSFTDMNSRDAPSNSHVTDVGKENMLNNPEE 60
           MVFSHNKNSNQFDPLSYVNLSGLDADSQSVSFTDMNSRDAPSNSHVTDVGKENMLNNPEE
Sbjct: 1   MVFSHNKNSNQFDPLSYVNLSGLDADSQSVSFTDMNSRDAPSNSHVTDVGKENMLNNPEE 60

Query: 61  SKIASTGLKPGSPISPENFSFSSLPGSSCHLSTLDHGKRPLSDVRPFQVACKRPKQIDEN 120
           SKIASTGLKPGSPISPENFSFSSLPGSSCHLSTLDHGKRPLSDVRPFQVACKRPKQIDEN
Sbjct: 61  SKIASTGLKPGSPISPENFSFSSLPGSSCHLSTLDHGKRPLSDVRPFQVACKRPKQIDEN 120

Query: 121 XXXXXXXXXXXXDLADETREPDYIYHNSGISACNTSSSIPYSNLEQLIGEENLYLPDWVT 180
                       DLADETREPDYIYHNSGISACNTSSSIPYSNLEQLIGEENLYLPDWVT
Sbjct: 121 TWSTSTFETSFSDLADETREPDYIYHNSGISACNTSSSIPYSNLEQLIGEENLYLPDWVT 180

Query: 181 TFPGYTGDFWPAPVADQVDDIDSPIHDHLPRKAVAIGPDHQADIPEWRPRISMTVPYGSG 240
           TFPGYTGDFWPAPVADQVDDIDSPIHDHLPRKAVAIGPDHQADIPEWRPRISMTVPYGSG
Sbjct: 181 TFPGYTGDFWPAPVADQVDDIDSPIHDHLPRKAVAIGPDHQADIPEWRPRISMTVPYGSG 240

Query: 241 SCADLSYSSVSTSGSAPRDEDSESDKWIKHCVIEMPSSCSVAWVGDHGRDCGCSDEGSIR 300
           SCADLSYSSVSTSGSAPRDEDSESDKWIKHCVIEMPSSCSVAWVGDHGRDCGCSDEGSIR
Sbjct: 241 SCADLSYSSVSTSGSAPRDEDSESDKWIKHCVIEMPSSCSVAWVGDHGRDCGCSDEGSIR 300

Query: 301 CVRRHVLESRENLKRIFGEDKFRELGLCDMGEDIAQRWTDEEESLFYRVVYSNPPSLGKN 360
           CVRRHVLESRENLKRIFGEDKFRELGLCDMGEDIAQRWTDEEESLFYRVVYSNPPSLGKN
Sbjct: 301 CVRRHVLESRENLKRIFGEDKFRELGLCDMGEDIAQRWTDEEESLFYRVVYSNPPSLGKN 360

Query: 361 FWHFLPRALPGKTSMELVSYYFNVFMLRKRAQQNRSEPLHXXXXXXXXXXXXXXXXXXXX 420
           FWHFLPRALPGKTSMELVSYYFNVFMLRKRAQQNRSEPLH                    
Sbjct: 361 FWHFLPRALPGKTSMELVSYYFNVFMLRKRAQQNRSEPLHVDSDDDEVPDEPSVTEDEDS 420

Query: 421 AVESPAHDYYVNNPMSPESEDSFHEKVADSLSGLRDGPSQKPLGSNTDNPGGDADVQDES 480
           AVESPAHDYYVNNPMSPESEDSFHEKVADSLSGLRDGPSQKPLGSNTDNPGGDADVQDES
Sbjct: 421 AVESPAHDYYVNNPMSPESEDSFHEKVADSLSGLRDGPSQKPLGSNTDNPGGDADVQDES 480

Query: 481 CTSFEDHNGAHGSNGVQCAEFHMMLPNAALDHYSDRGACM 520
           CTSFEDHNGAHGSNGVQCAEFHMMLPNAALDHYSDRGACM
Sbjct: 481 CTSFEDHNGAHGSNGVQCAEFHMMLPNAALDHYSDRGACM 520



>Os04g0166400 AT-rich interaction region domain containing protein
          Length = 538

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 91/196 (46%), Gaps = 35/196 (17%)

Query: 211 RKAVAIGPDHQADIPEWRPRISMTVPYGSGSCADLSYSSVSTSGSAPRDED-SESDKWIK 269
           R  + +G + QA +P+W                         +G  P   D +E+ KW+ 
Sbjct: 324 RNKIPVGSEFQAQVPQW-------------------------TGELPVSYDNAETRKWLG 358

Query: 270 HCVIEMPSS-------CSVAWVGDHGRDCGCSDEGSIRCVRRHVLESRENLKRIFGEDKF 322
             V  + +        C+    G  G  CGC+  GS+ CVR HV E R  L+R   +  F
Sbjct: 359 TKVWPLENGNRKLSYFCNPVGKGREGV-CGCNLPGSVECVRFHVAERRLQLRREL-DSAF 416

Query: 323 RELGLCDMGEDIAQRWTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVSYYF 382
              G   MGE+IA  WTD+EE+ F   V  N PS G+NFW  L      K   ELVSYYF
Sbjct: 417 YAWGFDRMGEEIALSWTDKEEANFKACVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYF 476

Query: 383 NVFMLRKRAQQNRSEP 398
           N F+LR+R  QNR  P
Sbjct: 477 NCFLLRRRCYQNRMTP 492



>Os10g0446400 Conserved hypothetical protein
          Length = 263

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 54/105 (51%), Gaps = 1/105 (0%)

Query: 291 CGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELGLCDMGEDIAQRWTDEEESLFYRVV 350
           C C   GS  CVR HV E +  LKR  G   +  +   ++G+D A  W  +EE  F  +V
Sbjct: 117 CNCEVPGSTSCVRFHVAEKKTELKREMGS-SYYAMKFDEIGQDAALTWQKDEEKKFETIV 175

Query: 351 YSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVFMLRKRAQQNR 395
             N PS   NFW  L  A   K    LVSYY NVF  R+RA QNR
Sbjct: 176 QQNLPSSKYNFWDKLRAAFRYKGERALVSYYNNVFQPRRRAFQNR 220



>Os01g0852500 ELM2 domain containing protein
          Length = 403

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 25/189 (13%)

Query: 211 RKAVAIGPDHQADIPEWR--PRISMTVPYGSGSCADLSYSSVSTSGSAPRDEDSESDKWI 268
           RK + +G   QA++P+W   P   +       + + +    + T    P  +  ++DK I
Sbjct: 195 RKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKM----LGTRIWPPEGQVLQTDKKI 250

Query: 269 KHCVIEMPSSCSVAWVGDHGR--DCGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELG 326
                              GR   C CS  GS  C + H   +R+ L+   G   F E  
Sbjct: 251 ----------------AGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGR-AFTEWR 293

Query: 327 LCDMGEDIAQRWTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVFM 386
              MGE++++ WT EE+  F  +    P    K FW    + L  KT +ELV YY NVF+
Sbjct: 294 FDSMGEEVSKMWTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFL 353

Query: 387 LRKRAQQNR 395
           +R+   Q R
Sbjct: 354 MRRVLSQCR 362



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,622,641
Number of extensions: 910153
Number of successful extensions: 1756
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 4
Length of query: 520
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 415
Effective length of database: 11,553,331
Effective search space: 4794632365
Effective search space used: 4794632365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)