Os04g0166400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AT-rich interaction region domain containing protein.
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Os04g0166400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AT-rich interaction region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.57 | 0.238 | 8.5 | -0.431 | 0.463 | 0.279 | 0.00853 | 0.734 | -0.0952 | 8.08 | 20.04 | 227 | -- | -- |
| 27.27 | 0.243 | 8.52 | -0.508 | 0.443 | 0.172 | -0.0877 | -- | -0.107 | 8.13 | 20.4 | 165 | -- | -- |
| 25.57 | 0.235 | 8.5 | -0.431 | 0.463 | 0.278 | -- | 0.731 | -0.0953 | 8.08 | 20.05 | 225 | -- | -- |
| 27.25 | 0.243 | 8.52 | -0.52 | 0.443 | 0.181 | -- | -- | -0.118 | 8.12 | 20.41 | 141 | -- | -- |
| 36.85 | 0.284 | 8.52 | -0.441 | -- | 0.224 | -- | 0.446 | -0.098 | -- | 20.3 | 147 | -- | -- |
| 28.48 | 0.25 | 8.51 | -0.469 | 0.448 | -- | -0.0654 | -- | -0.0834 | 8.44 | -- | -- | -- | -- |
| 28.49 | 0.25 | 8.51 | -0.47 | 0.448 | -- | -- | -- | -0.0833 | 8.46 | -- | -- | -- | -- |
| 37.58 | 0.287 | 8.53 | -0.521 | -- | 0.214 | -- | -- | -0.119 | -- | 20.6 | 113 | -- | -- |
| 33.97 | 0.273 | 8.5 | -- | 0.438 | 0.0892 | -- | -- | -0.0456 | 8.37 | 20.5 | 136 | -- | -- |
| 39.7 | 0.294 | 8.52 | -0.468 | -- | -- | -- | -- | -0.0789 | -- | -- | -- | -- | -- |
| 34.33 | 0.274 | 8.5 | -- | 0.446 | -- | -- | -- | -0.0309 | 8.53 | -- | -- | -- | -- |
| 43.54 | 0.307 | 8.5 | -- | -- | -0.31 | -- | -- | 0.0372 | -- | 18.4 | 806 | -- | -- |
| 45.49 | 0.315 | 8.51 | -- | -- | -- | -- | -- | -0.0269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 4 | 23.76 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 7 | 23.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 21 |
| 16 | 24.32 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 17 | 24.33 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 6 |
| 20 | 24.34 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 16 | 14 |
| 22 | 24.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 4 |
| 30 | 24.52 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 14 |
| 36 | 24.56 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 19 |
| 41 | 24.58 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 42 | 24.58 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 48 | 24.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 52 | 24.63 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 1 |
| 75 | 24.70 | humidity | 80.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 83 | 24.73 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 91 | 24.76 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 20 | 6 |
| 98 | 24.78 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 105 | 24.79 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 5 |
| 106 | 24.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 113 | 24.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 115 | 24.81 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 4 |
| 116 | 24.81 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 12 |
| 120 | 24.82 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 131 | 24.84 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 134 | 24.85 | temperature | 15.0 | 10 | > th | dose independent | rect. | 21 | 5 |
| 137 | 24.85 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 19 | 4 |
| 140 | 24.86 | humidity | 80.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 170 | 24.90 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 2 | 9 |
| 183 | 24.91 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 18 | 6 |
| 184 | 24.91 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 11 |
| 191 | 24.92 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 194 | 24.93 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 196 | 24.93 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 204 | 24.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 210 | 24.94 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 20 |
| 227 | 24.96 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 229 | 24.96 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 264 | 24.99 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 274 | 25.00 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 299 | 25.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 304 | 25.01 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 314 | 25.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 14 |
| 325 | 25.03 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 359 | 25.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 368 | 25.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 397 | 25.09 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 424 | 25.10 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 449 | 25.11 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 479 | 25.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 480 | 25.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 489 | 25.15 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 21 | 5 |
| 498 | 25.16 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 509 | 25.16 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 514 | 25.16 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 536 | 25.17 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 590 | 25.19 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 594 | 25.19 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 596 | 25.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 10 |
| 598 | 25.19 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 619 | 25.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 14 |
| 657 | 25.22 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 19 | 4 |
| 679 | 25.23 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 683 | 25.23 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 747 | 25.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 750 | 25.26 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 753 | 25.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 780 | 25.27 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 21 | 3 |
| 799 | 25.28 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 825 | 25.29 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 837 | 25.29 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 838 | 25.29 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 855 | 25.31 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 869 | 25.31 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 874 | 25.32 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 20 | 2 |
| 931 | 25.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 935 | 25.35 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |