BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0166400 Os04g0166400|AK064765
(538 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11400.1 | chr4:6938717-6940539 FORWARD LENGTH=574 177 1e-44
AT2G46040.1 | chr2:18935684-18937807 REVERSE LENGTH=563 145 5e-35
AT5G04110.1 | chr5:1110757-1114112 REVERSE LENGTH=547 134 1e-31
AT1G26580.1 | chr1:9185620-9187213 FORWARD LENGTH=494 117 2e-26
AT2G03470.1 | chr2:1045694-1047130 REVERSE LENGTH=451 116 4e-26
AT1G13880.1 | chr1:4749603-4750967 FORWARD LENGTH=425 109 4e-24
>AT4G11400.1 | chr4:6938717-6940539 FORWARD LENGTH=574
Length = 573
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 124/213 (58%), Gaps = 12/213 (5%)
Query: 324 RNKIPVGSEFQAQVPQWTGELPVSYDNAETRKWLGTKVWPLENGNRKLSYFCNP-VGKGR 382
R I VG + QAQV +WT E V D+ KWLGT++WP EN N VGKGR
Sbjct: 371 RRCIKVGHQHQAQVDEWT-ESGVDSDS----KWLGTRIWPPENSEALDQTLGNDLVGKGR 425
Query: 383 EGVCGCNLPGSVECVRFHVAERRLQLRRELDSAFYAWGFDRMGEEIALSWTDKEEANFKA 442
C C L G VEC R H+AE+R++L+REL F+ W F++MGEE+ L WT++EE FK
Sbjct: 426 PDSCSCELSGFVECTRLHIAEKRMELKRELGDDFFHWRFNQMGEEVCLRWTEEEEKRFKD 485
Query: 443 CVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRRCYQNRMTPNNIDSDDEDE 502
+ + S FW F K R+ELVSYYFN FL+ RR YQNR+TP +IDSD DE
Sbjct: 486 MIIADPQS----FWTNAAKNFPKKKREELVSYYFNVFLINRRRYQNRVTPKSIDSD--DE 539
Query: 503 TEFGFLGNRLGHNATKYDSSKYTLCIESTHCMD 535
FG +G G +A S +C ++ C D
Sbjct: 540 GAFGSVGGSFGRDAVTSSGSDVMICAQNRQCED 572
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 37 LFDTVLAAFLREVYPGGREVRPLPAKLGDGSRVDLLRLFSAIRAAGGYAATSSSPAVWAS 96
LFD L FL E ++PLPA +GDG VDL +LF +R G+ T S +W
Sbjct: 29 LFDQALLVFLEE----EGSIKPLPAVIGDGKNVDLFKLFVLVREREGF-DTVSRKRLWEV 83
Query: 97 AAESVCLDATLAAPVKLIYHKYLAALDRWIQRLVEAHGPFLDGNDGRKK 145
AE + D +L + LIY KYL +++W + E+ D D KK
Sbjct: 84 VAEKLGFDCSLVPSLILIYLKYLNRMEKWA--VEESRIVNWDNKDSEKK 130
>AT2G46040.1 | chr2:18935684-18937807 REVERSE LENGTH=563
Length = 562
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 105/172 (61%), Gaps = 8/172 (4%)
Query: 329 VGSEFQAQVPQWTGELPVSYDNAETRKWLGTKVWPLENGNRKLSYFC--NPVGKGREGVC 386
VGS+FQA+VP+WTG P S KWLGT++WPL K + + +GKGR+ C
Sbjct: 362 VGSKFQAKVPEWTGITPES-----DSKWLGTRIWPLTKEQTKANLLIERDRIGKGRQDPC 416
Query: 387 GCNLPGSVECVRFHVAERRLQLRRELDSAFYAWGFDRMGEEIALSWTDKEEANFKACVQL 446
GC+ PGS+ECV+FH+ +R +L+ EL AFY W FD MGE WTD E K+ +
Sbjct: 417 GCHNPGSIECVKFHITAKRDKLKLELGPAFYMWCFDVMGECTLQYWTDLELKKIKSLMSS 476
Query: 447 NAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRRCYQNRMTPNNIDSD 498
S F + M+ SK R ++VSY++N LL+ R Q+R+TP++IDSD
Sbjct: 477 PP-SLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYRASQSRITPHDIDSD 527
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 37 LFDTVLAAFLREVYPGGREVRPLPAKLGDGSRVDLLRLFSAIRAAGGYAATSSSPAVWAS 96
LF +L +FL E + PLPA G+G VDL LF + GG+ A S + W
Sbjct: 48 LFRPLLDSFLAE-FCSADGFLPLPAMTGEGRTVDLFNLFLNVTHKGGFDAVSEN-GSWDE 105
Query: 97 AAESVCLDATLAAPVKLIYHKYLAALDRWIQRLV 130
+ L++ +A KLIY KYL A RW+ R+V
Sbjct: 106 VVQESGLESYDSASAKLIYVKYLDAFGRWLNRVV 139
>AT5G04110.1 | chr5:1110757-1114112 REVERSE LENGTH=547
Length = 546
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 101/182 (55%), Gaps = 8/182 (4%)
Query: 320 TSQQRNKIPVGSEFQAQVPQWT-----GELPVSYDNAETRKWLGTKVWPLENGNRKLSYF 374
+++ R IP+G FQA++P W G+ S ++ T +WLGT VWP + K +
Sbjct: 354 SNKTRPAIPIGPRFQAEIPVWIAPTKKGKFYGSPGDSNTLRWLGTGVWP--TYSLKKTVH 411
Query: 375 CNPVGKGREGVCGCNLPGSVECVRFHVAERRLQLRRELDSAFYAWGFDRMGEEIAL-SWT 433
VG+GR C C P S C++ H E + L +E++ AF W FD+MGEEI L SWT
Sbjct: 412 SKKVGEGRSDSCSCASPRSTNCIKRHKKEAQELLEKEINRAFSTWEFDQMGEEIVLKSWT 471
Query: 434 DKEEANFKACVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRRCYQNRMTPN 493
KEE F+A V+ N SS FW+ F K +K+L+SYY+N FL++R N
Sbjct: 472 AKEERRFEALVKKNPLSSSDGFWEFASNAFPQKSKKDLLSYYYNVFLIKRMRLLKSSAAN 531
Query: 494 NI 495
NI
Sbjct: 532 NI 533
>AT1G26580.1 | chr1:9185620-9187213 FORWARD LENGTH=494
Length = 493
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 15/197 (7%)
Query: 318 LFTSQQRNKIPVGSEFQAQVPQWTGELP-------VSYDN-----AETRKWLGTKVWPLE 365
L + + ++P+G QA++P+W G +S N A+ K GT V P+
Sbjct: 126 LLDQRAKKQVPIGPGHQAEIPEWEGSQTGNIETSGMSVQNHISGCADGEKLFGTSVIPMP 185
Query: 366 NGNRKLSYFCNPVGKGREGVCGCNLPGSVECVRFHVAERRLQLRREL-DSAFYAWGFDRM 424
G +++ + VGKGR+ C C SV CV H+ E R +L + + F G M
Sbjct: 186 -GLTTVAHIDDIVGKGRK-FCVCRDRDSVRCVCQHIKEAREELVKTFGNETFKELGLCEM 243
Query: 425 GEEIALSWTDKEEANFKACVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRR 484
GE+ AL W+D++ F V N + G+NFW+ L F S+ +KE+VS+YFN F+LRRR
Sbjct: 244 GEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSRTQKEIVSFYFNVFVLRRR 303
Query: 485 CYQNRMTPNNIDSDDED 501
QNR +IDSDD++
Sbjct: 304 AIQNRAFILDIDSDDDE 320
>AT2G03470.1 | chr2:1045694-1047130 REVERSE LENGTH=451
Length = 450
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 102/190 (53%), Gaps = 13/190 (6%)
Query: 318 LFTSQQRNKIPVGSEFQAQVPQWTGELPVSYDNAETRKWLGTK-----VWPLENGNRKLS 372
L R ++ VGS QA +P++ E + A T++ L K V P+ + +
Sbjct: 114 LMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMRKCVIPMSDSD---- 169
Query: 373 YFCNPVGKGREGVCGCNLPGSVECVRFHVAERRLQLRRELD-SAFYAWGFDRMGEEIALS 431
C G+GR+ C C GS+ CVR H+ E R L + F G MGEE+A
Sbjct: 170 -LCG-TGQGRKE-CLCLDKGSIRCVRRHIIEARESLVETIGYERFMELGLCEMGEEVASL 226
Query: 432 WTDKEEANFKACVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRRCYQNRMT 491
WT++EE F V N S+GR+FWK+L F S+ KELVSYYFN F+LRRR QNR
Sbjct: 227 WTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSRTMKELVSYYFNVFILRRRGIQNRFK 286
Query: 492 PNNIDSDDED 501
++DSDD++
Sbjct: 287 ALDVDSDDDE 296
>AT1G13880.1 | chr1:4749603-4750967 FORWARD LENGTH=425
Length = 424
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 106/218 (48%), Gaps = 31/218 (14%)
Query: 324 RNKIPVGSEFQAQVPQWTGELP-------VSYDNAETRKWLGTKVWPLENGNRKLSYFCN 376
R +P+GS++QA +P+ E V YD + G V P+ + ++
Sbjct: 125 RKTVPIGSDYQADIPECVKEEANDQSGQGVGYDEEQV---TGKCVIPMPDCETEVC---- 177
Query: 377 PVGKGREGVCGCNLPGSVECVRFHVAERRLQLRRELDSAFYAWGFDR--------MGEEI 428
+GKGR+ C C GS+ CV+ H+ E R L F G+DR MGEE+
Sbjct: 178 KIGKGRKE-CICLDKGSIRCVQQHIMENREDL-------FATIGYDRCLDIGLCEMGEEV 229
Query: 429 ALSWTDKEEANFKACVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRRCYQN 488
A T+ EE F V N S R+FWK L F S+ KE+VSYYFN F+LRRR QN
Sbjct: 230 AARLTEDEEDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTMKEIVSYYFNVFILRRRAIQN 289
Query: 489 RMTPNNIDSDDEDETEFGFLGNRLGHNATKYDSSKYTL 526
R ++DSDD DE + + G D ++ +L
Sbjct: 290 RSKSLDVDSDD-DEWQVEYDNTFYGAETPSDDKAEKSL 326
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,108,115
Number of extensions: 530212
Number of successful extensions: 1150
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 8
Length of query: 538
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 435
Effective length of database: 8,282,721
Effective search space: 3602983635
Effective search space used: 3602983635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)