BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0425200 Os03g0425200|AK101293
(322 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0425200 Inosine/uridine-preferring nucleoside hydrolas... 648 0.0
Os08g0557900 Inosine/uridine-preferring nucleoside hydrolas... 331 4e-91
Os09g0567900 Inosine/uridine-preferring nucleoside hydrolas... 317 7e-87
>Os03g0425200 Inosine/uridine-preferring nucleoside hydrolase domain containing
protein
Length = 322
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MTTTKKKLVIDTDPGIDDAMAIFVALRSPEVELLGLTTIFGNVYTTLATRNALHLLEAVG 60
MTTTKKKLVIDTDPGIDDAMAIFVALRSPEVELLGLTTIFGNVYTTLATRNALHLLEAVG
Sbjct: 1 MTTTKKKLVIDTDPGIDDAMAIFVALRSPEVELLGLTTIFGNVYTTLATRNALHLLEAVG 60
Query: 61 RTDIPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPTGKPLDQSAAAFLVEQANLY 120
RTDIPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPTGKPLDQSAAAFLVEQANLY
Sbjct: 61 RTDIPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPTGKPLDQSAAAFLVEQANLY 120
Query: 121 PGQVTVVALGPLTNLALAIELDPSFPKKIGQIVILGGAYSVNGNVNPAAEANIFGDPDAA 180
PGQVTVVALGPLTNLALAIELDPSFPKKIGQIVILGGAYSVNGNVNPAAEANIFGDPDAA
Sbjct: 121 PGQVTVVALGPLTNLALAIELDPSFPKKIGQIVILGGAYSVNGNVNPAAEANIFGDPDAA 180
Query: 181 DIVFTSGADILAVGINITHQVVLSDADREKLEQSDSKYARYLSKILGLYYDYHKDAYFIK 240
DIVFTSGADILAVGINITHQVVLSDADREKLEQSDSKYARYLSKILGLYYDYHKDAYFIK
Sbjct: 181 DIVFTSGADILAVGINITHQVVLSDADREKLEQSDSKYARYLSKILGLYYDYHKDAYFIK 240
Query: 241 GVYLHDPATLIAAVDPSLMTYTEGVVRVQTDGITKGLTVFDTTKKRYGEITAWTGKPTVK 300
GVYLHDPATLIAAVDPSLMTYTEGVVRVQTDGITKGLTVFDTTKKRYGEITAWTGKPTVK
Sbjct: 241 GVYLHDPATLIAAVDPSLMTYTEGVVRVQTDGITKGLTVFDTTKKRYGEITAWTGKPTVK 300
Query: 301 VAVTVDAPAVVEMIMQRLTTDD 322
VAVTVDAPAVVEMIMQRLTTDD
Sbjct: 301 VAVTVDAPAVVEMIMQRLTTDD 322
>Os08g0557900 Inosine/uridine-preferring nucleoside hydrolase domain containing
protein
Length = 324
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 161/314 (51%), Positives = 218/314 (69%), Gaps = 1/314 (0%)
Query: 5 KKKLVIDTDPGIDDAMAIFVALRSPEVELLGLTTIFGNVYTTLATRNALHLLEAVGRTDI 64
+ KL+IDTDPGIDD+M I +A R+P VE++GLTTIFGN T AT+NAL L E G ++
Sbjct: 9 RDKLIIDTDPGIDDSMTILMAFRAPTVEIIGLTTIFGNTTTKNATQNALLLCERAGHPEV 68
Query: 65 PVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFPPPTGKPLDQSAAAFLVEQANLYPGQV 124
PVAEGS +K + R+A FVHGSDGLGN P PT K +D++AA F+V + + +PG+V
Sbjct: 69 PVAEGSAEPLKGG-EPRVADFVHGSDGLGNLFLPAPTSKKVDENAAEFMVNKVSQFPGEV 127
Query: 125 TVVALGPLTNLALAIELDPSFPKKIGQIVILGGAYSVNGNVNPAAEANIFGDPDAADIVF 184
+++ALGPLTN+ALAI+ DPSF K+ +IV+LGGA+ GNV+PAAEANI+GDP+AADIVF
Sbjct: 128 SILALGPLTNVALAIKRDPSFASKVKKIVVLGGAFFAAGNVSPAAEANIYGDPEAADIVF 187
Query: 185 TSGADILAVGINITHQVVLSDADREKLEQSDSKYARYLSKILGLYYDYHKDAYFIKGVYL 244
TSGAD+ VGINIT QV +D D +L S K+A++L + Y D+H ++ G++L
Sbjct: 188 TSGADVDVVGINITTQVCFTDEDLLELRNSKGKHAQFLCDMCQFYRDWHAESDGFHGIFL 247
Query: 245 HDPATLIAAVDPSLMTYTEGVVRVQTDGITKGLTVFDTTKKRYGEITAWTGKPTVKVAVT 304
HDP + A V P T+ +GVVRV+T GI G T+ D K++ W+G + VA T
Sbjct: 248 HDPVSFTALVHPEYFTFKKGVVRVETQGICTGHTLMDQGLKKWNSENPWSGYKPISVAWT 307
Query: 305 VDAPAVVEMIMQRL 318
VD P V+ + + L
Sbjct: 308 VDVPNVLAFVKELL 321
>Os09g0567900 Inosine/uridine-preferring nucleoside hydrolase domain containing
protein
Length = 337
Score = 317 bits (812), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 160/316 (50%), Positives = 216/316 (68%), Gaps = 2/316 (0%)
Query: 4 TKKKLVIDTDPGIDDAMAIFVALRSPEVELLGLTTIFGNVYTTLATRNALHLLEAVGRTD 63
T++K++IDTDPGIDD++AI +A +P V+++GLTTIFGN T+ ATRNAL L + GR +
Sbjct: 19 TEEKVIIDTDPGIDDSVAIMMAFEAPGVKVVGLTTIFGNCTTSHATRNALILCDRAGRPE 78
Query: 64 IPVAEGSHVTIKKATKLRIASFVHGSDGLGNQNFP-PPTGKPLDQSAAAFLVEQANLYPG 122
+PVAEGS +K K +A FVHGSDGLGN +FP P T ++QSAA FLV++ + PG
Sbjct: 79 VPVAEGSAEPLKGG-KPHVADFVHGSDGLGNTSFPDPTTTNKVEQSAAEFLVDKVSESPG 137
Query: 123 QVTVVALGPLTNLALAIELDPSFPKKIGQIVILGGAYSVNGNVNPAAEANIFGDPDAADI 182
+++V+ALGPLTN+ALA++ D SF K+ +IV+LGGA+ GN P+AEANI DP+AADI
Sbjct: 138 EISVLALGPLTNIALAMKKDSSFASKVKRIVVLGGAFFAAGNATPSAEANIHSDPEAADI 197
Query: 183 VFTSGADILAVGINITHQVVLSDADREKLEQSDSKYARYLSKILGLYYDYHKDAYFIKGV 242
VFTSGADI VG+NIT QV +D D +L S K+A++L I Y D+H +Y + +
Sbjct: 198 VFTSGADIYVVGLNITTQVYFTDKDMLELRNSKGKHAQFLCDICKFYRDWHVHSYGVDAL 257
Query: 243 YLHDPATLIAAVDPSLMTYTEGVVRVQTDGITKGLTVFDTTKKRYGEITAWTGKPTVKVA 302
+LHDP + A V P T+ +GVVRV+T GI KG T D K++ WTG + VA
Sbjct: 258 FLHDPVSFTALVHPEYFTFKKGVVRVETQGICKGHTSMDMGLKKWNSDNPWTGYSPISVA 317
Query: 303 VTVDAPAVVEMIMQRL 318
TVD P V+ + L
Sbjct: 318 WTVDVPKVLAYAKELL 333
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,704,573
Number of extensions: 444549
Number of successful extensions: 1212
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1213
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 221
Effective length of database: 11,762,187
Effective search space: 2599443327
Effective search space used: 2599443327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)