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Os08g0557900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Inosine/uridine-preferring nucleoside hydrolase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0237) R2 : 0.336
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.662 (0.0616) R2dC : 0.169 R2C : 0.108
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.548 (0.0498) R2dN8 : 0.228 R2N8 : 0.167
σ : 0.446
deviance : 91.02
__
_____
C
peak time of C : 4.98
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.22 0.397 11.6 -0.342 0.677 0.582 0.628 -0.722 -0.609 7.89 17.72 7 -- --
72.73 0.397 11.6 -0.355 0.694 0.599 1.28 -- -0.613 8.11 15.97 6 -- --
72.11 0.395 11.6 -0.341 0.672 0.567 -- -0.915 -0.601 7.74 17.81 6 -- --
76.17 0.406 11.6 -0.312 0.704 0.568 -- -- -0.616 7.81 15.96 5 -- --
90.7 0.444 11.6 -0.264 -- 0.558 -- -1.18 -0.568 -- 22.35 238 -- --
88.32 0.441 11.6 -0.32 0.668 -- -0.04 -- -0.584 4.94 -- -- -- --
88.33 0.44 11.6 -0.32 0.668 -- -- -- -0.584 4.96 -- -- -- --
91.46 0.445 11.6 -0.267 -- 0.661 -- -- -0.512 -- 18.07 349 -- --
78.4 0.412 11.6 -- 0.685 0.573 -- -- -0.614 7.87 15.96 5 -- --
111.78 0.494 11.6 -0.295 -- -- -- -- -0.566 -- -- -- -- --
91.02 0.446 11.6 -- 0.662 -- -- -- -0.548 4.98 -- -- -- --
92.63 0.448 11.6 -- -- 0.704 -- -- -0.487 -- 10 534 -- --
114.08 0.499 11.6 -- -- -- -- -- -0.534 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.66 radiation 20.0 90 < th dose independent rect. 15 18
2 65.83 temperature 10.0 90 > th dose dependent rect. 9 18
8 66.66 temperature 10.0 270 > th dose dependent rect. 2 5
9 66.78 precipitation 0.1 270 < th dose independent rect. 14 17
10 66.78 precipitation 0.1 270 < th dose dependent rect. 14 17
11 66.79 temperature 15.0 270 > th dose independent rect. 7 7
12 66.79 temperature 15.0 270 > th dose independent rect. 7 19
15 67.12 wind 7.0 270 < th dose independent rect. 7 7
17 67.22 humidity 50.0 270 > th dose independent rect. 7 7
23 67.34 radiation 1.0 270 > th dose independent rect. 7 7
26 67.37 radiation 40.0 90 < th dose dependent rect. 15 18
32 67.46 temperature 15.0 270 > th dose independent rect. 8 17
35 67.50 temperature 15.0 90 > th dose independent rect. 9 6
37 67.55 radiation 20.0 270 < th dose independent rect. 2 6
38 67.57 precipitation 0.1 270 < th dose independent rect. 7 7
40 67.57 precipitation 0.1 270 < th dose dependent rect. 7 7
45 67.62 wind 9.0 270 < th dose independent rect. 7 19
47 67.67 atmosphere 995.0 270 > th dose independent rect. 7 7
48 67.67 atmosphere 1015.0 270 < th dose independent rect. 7 7
49 67.67 temperature 10.0 270 > th dose independent rect. 14 17
50 67.68 temperature 10.0 270 > th dose dependent rect. 18 8
52 67.72 humidity 50.0 10 > th dose independent rect. 16 17
55 67.78 humidity 50.0 90 > th dose independent rect. 9 6
58 67.84 atmosphere 1015.0 270 < th dose independent rect. 7 19
59 67.86 radiation 1.0 10 > th dose independent rect. 9 7
68 67.92 precipitation 0.1 270 < th dose independent rect. 2 5
69 67.92 humidity 90.0 90 < th dose independent rect. 9 6
70 67.92 precipitation 0.1 270 < th dose dependent rect. 2 5
73 67.96 radiation 30.0 10 < th dose independent rect. 16 17
86 68.13 wind 1.0 270 > th dose independent rect. 7 6
91 68.17 humidity 70.0 270 > th dose independent rect. 2 5
94 68.19 wind 7.0 270 < th dose independent rect. 2 5
95 68.19 wind 1.0 90 > th dose independent rect. 9 6
98 68.21 wind 9.0 10 < th dose independent rect. 9 7
106 68.27 precipitation 0.1 90 < th dose independent rect. 9 6
108 68.27 radiation 40.0 270 < th dose dependent rect. 2 6
109 68.27 precipitation 0.1 90 < th dose dependent rect. 9 6
118 68.34 atmosphere 1015.0 90 < th dose independent rect. 9 6
124 68.37 temperature 10.0 10 > th dose independent rect. 9 7
126 68.37 atmosphere 1015.0 10 < th dose independent rect. 9 7
127 68.37 precipitation 0.1 10 < th dose independent rect. 9 7
128 68.37 temperature 10.0 10 > th dose independent rect. 16 17
129 68.37 precipitation 0.1 10 < th dose dependent rect. 9 7
131 68.38 temperature 10.0 270 > th dose independent rect. 2 5
133 68.38 temperature 30.0 270 < th dose independent rect. 2 5
134 68.38 humidity 50.0 270 > th dose independent rect. 2 5
136 68.38 atmosphere 995.0 270 > th dose independent rect. 2 5
137 68.38 atmosphere 1015.0 270 < th dose independent rect. 2 5
143 68.42 radiation 30.0 90 < th dose independent rect. 13 22
149 68.45 wind 9.0 270 < th dose independent rect. 14 17
154 68.50 temperature 10.0 90 > th dose dependent rect. 9 6
155 68.50 temperature 10.0 10 > th dose dependent rect. 9 7
161 68.54 wind 1.0 270 > th dose independent rect. 13 18
162 68.54 atmosphere 995.0 90 > th dose independent rect. 15 18
167 68.57 precipitation 0.1 270 < th dose independent rect. 3 15
168 68.57 radiation 30.0 10 < th dose independent rect. 14 19
170 68.57 precipitation 0.1 270 < th dose dependent rect. 3 15
173 68.61 atmosphere 995.0 90 > th dose independent rect. 9 6
190 68.65 temperature 10.0 270 > th dose dependent rect. 7 19
196 68.69 wind 9.0 270 < th dose dependent rect. 2 5
200 68.71 temperature 15.0 270 > th dose independent rect. 18 9
212 68.79 atmosphere 995.0 10 > th dose independent rect. 16 17
213 68.79 temperature 10.0 270 > th dose dependent rect. 7 6
226 68.87 wind 9.0 30 < th dose independent rect. 16 17
228 68.89 radiation 40.0 270 < th dose dependent rect. 2 15
230 68.90 radiation 40.0 270 < th dose independent rect. 11 21
237 68.94 wind 9.0 270 < th dose dependent rect. 8 5
238 68.94 humidity 50.0 270 > th dose dependent rect. 2 5
244 68.98 atmosphere 995.0 10 > th dose independent rect. 9 7
251 68.99 radiation 40.0 10 < th dose dependent rect. 14 19
266 69.07 precipitation 0.1 270 < th dose independent rect. 7 19
268 69.07 precipitation 0.1 270 < th dose dependent rect. 7 19
290 69.15 temperature 10.0 1440 > th dose independent rect. 10 7
293 69.15 temperature 10.0 1440 > th dose independent rect. 17 17
306 69.20 humidity 90.0 10 < th dose independent rect. 9 7
346 69.36 radiation 10.0 10 > th dose independent rect. 9 9
365 69.38 temperature 15.0 270 > th dose independent rect. 21 16
428 69.46 radiation 10.0 270 < th dose independent rect. 18 9
442 69.46 radiation 40.0 90 < th dose dependent rect. 13 22
458 69.52 radiation 10.0 270 < th dose dependent rect. 18 9
467 69.58 atmosphere 995.0 270 > th dose independent rect. 18 9
469 69.59 atmosphere 995.0 270 > th dose independent rect. 7 19
470 69.59 radiation 30.0 10 < th dose independent rect. 12 21
474 69.60 wind 9.0 270 < th dose independent rect. 18 9
477 69.61 humidity 50.0 270 > th dose independent rect. 18 9
481 69.61 temperature 10.0 270 > th dose independent rect. 3 15
482 69.61 atmosphere 1015.0 270 < th dose independent rect. 3 15
504 69.69 temperature 10.0 270 > th dose dependent rect. 9 3
532 69.77 radiation 40.0 270 < th dose independent rect. 2 15
576 69.89 atmosphere 1015.0 270 < th dose independent rect. 18 9
608 69.97 radiation 1.0 270 > th dose independent rect. 9 2
683 70.16 precipitation 0.1 270 < th dose independent rect. 11 22
686 70.16 precipitation 0.1 270 < th dose dependent rect. 11 22
698 70.19 wind 7.0 270 < th dose independent rect. 9 1
799 70.37 atmosphere 995.0 270 > th dose independent rect. 8 17
830 70.44 wind 1.0 270 > th dose independent rect. 2 5
921 70.64 temperature 30.0 270 < th dose independent rect. 18 9
932 70.67 humidity 90.0 270 < th dose independent rect. 9 3
937 70.69 wind 1.0 270 > th dose independent rect. 7 19
966 70.77 atmosphere 1015.0 270 < th dose independent rect. 21 16
971 70.78 precipitation 0.1 270 < th dose independent rect. 13 8
974 70.78 atmosphere 995.0 270 > th dose dependent rect. 2 5
975 70.78 precipitation 0.1 270 < th dose dependent rect. 13 8
978 70.79 precipitation 0.1 270 < th dose independent rect. 18 9
982 70.79 precipitation 0.1 270 < th dose dependent rect. 18 9