BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0410100 Os03g0410100|J100063A16
         (73 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0410100  Peptidase C48, SUMO/Sentrin/Ubl1 family protein     153   2e-38
Os01g0355900  Peptidase C48, SUMO/Sentrin/Ubl1 family protein      87   3e-18
Os03g0344300  Similar to SUMO protease                             84   3e-17

>Os03g0410100 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
          Length = 73

 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  YIIDICVVHINDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFR 60
          YIIDICVVHINDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFR
Sbjct: 1  YIIDICVVHINDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFR 60

Query: 61 KRTAKEILRLRAD 73
          KRTAKEILRLRAD
Sbjct: 61 KRTAKEILRLRAD 73



>Os01g0355900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
          Length = 497

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query: 9   HINDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFRKRTAKEIL 68
           HI+  +W       L    N WDCGMFMLK+IDF+SR +GL F Q+HM YFRKRTAKEIL
Sbjct: 433 HIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYSRDMGLTFGQKHMHYFRKRTAKEIL 492

Query: 69  RLRAD 73
            LRA+
Sbjct: 493 NLRAE 497



>Os03g0344300 Similar to SUMO protease
          Length = 157

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)

Query: 9   HINDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFRKRTAKEIL 68
            I+   W   +   +    N WDCGMFMLK+IDFHSRG+ + F+QE+M+YFRKRT  EIL
Sbjct: 93  EIDTNTWHEELVDDIPLQQNGWDCGMFMLKYIDFHSRGLSMSFSQENMEYFRKRTVMEIL 152

Query: 69  RLRAD 73
           RLRAD
Sbjct: 153 RLRAD 157



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.336    0.145    0.518 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,566,370
Number of extensions: 80493
Number of successful extensions: 221
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 3
Length of query: 73
Length of database: 17,035,801
Length adjustment: 44
Effective length of query: 29
Effective length of database: 14,738,385
Effective search space: 427413165
Effective search space used: 427413165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 149 (62.0 bits)