Os01g0355900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C48, SUMO/Sentrin/Ubl1 family protein.
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Os01g0355900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C48, SUMO/Sentrin/Ubl1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.29 | 0.25 | 10.6 | 1.27 | 0.357 | -0.649 | -0.152 | 1.62 | 0.362 | 1.04 | 9.65 | 728 | -- | -- |
| 30.46 | 0.257 | 10.6 | 1.09 | 0.348 | -0.537 | 0.00424 | -- | 0.326 | 2.61 | 10.93 | 7299 | -- | -- |
| 28.38 | 0.248 | 10.6 | 1.26 | 0.351 | -0.653 | -- | 1.59 | 0.361 | 0.896 | 10.02 | 693 | -- | -- |
| 30.46 | 0.257 | 10.6 | 1.09 | 0.34 | -0.532 | -- | -- | 0.331 | 2.6 | 10.3 | 7334 | -- | -- |
| 30.82 | 0.259 | 10.6 | 1.15 | -- | -0.841 | -- | 1.15 | 0.349 | -- | -1.875 | 47 | -- | -- |
| 35.2 | 0.278 | 10.7 | 0.82 | 0.325 | -- | -0.0112 | -- | 0.189 | 2.61 | -- | -- | -- | -- |
| 35.2 | 0.278 | 10.7 | 0.82 | 0.325 | -- | -- | -- | 0.189 | 2.61 | -- | -- | -- | -- |
| 31.88 | 0.263 | 10.6 | 0.985 | -- | -0.82 | -- | -- | 0.307 | -- | 11.1 | 24 | -- | -- |
| 51.72 | 0.335 | 10.7 | -- | 0.342 | -0.211 | -- | -- | 0.0699 | 2.33 | 30 | 799 | -- | -- |
| 41.36 | 0.301 | 10.7 | 0.834 | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
| 52.93 | 0.34 | 10.7 | -- | 0.341 | -- | -- | -- | 0.0974 | 2.64 | -- | -- | -- | -- |
| 54.52 | 0.345 | 10.7 | -- | -- | -0.45 | -- | -- | 0.149 | -- | 23.9 | 83 | -- | -- |
| 59.71 | 0.361 | 10.7 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 2 | 27.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 25 | 27.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 37 | 27.35 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 60 | 27.43 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 63 | 27.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 69 | 27.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 71 | 27.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 91 | 27.51 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 118 | 27.57 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 149 | 27.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 170 | 27.64 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 186 | 27.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 228 | 27.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 248 | 27.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 275 | 27.77 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 286 | 27.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 287 | 27.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 298 | 27.80 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 315 | 27.81 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 326 | 27.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 329 | 27.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 336 | 27.84 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 365 | 27.87 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 389 | 27.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 394 | 27.89 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 409 | 27.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 440 | 27.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 486 | 27.99 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 497 | 28.00 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 510 | 28.00 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 514 | 28.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 570 | 28.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 616 | 28.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 630 | 28.12 | humidity | 70 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 644 | 28.13 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 647 | 28.13 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 656 | 28.13 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 657 | 28.13 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 710 | 28.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 712 | 28.18 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 713 | 28.18 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 714 | 28.18 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 724 | 28.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 727 | 28.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 757 | 28.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 787 | 28.22 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 838 | 28.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 879 | 28.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 890 | 28.28 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 905 | 28.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 910 | 28.29 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 955 | 28.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 984 | 28.32 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 997 | 28.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |