BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0355900 Os01g0355900|AK120976
(497 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15880.1 | chr4:9012769-9015797 FORWARD LENGTH=490 316 2e-86
AT3G06910.1 | chr3:2178905-2181188 REVERSE LENGTH=503 283 1e-76
AT4G00690.1 | chr4:281313-283129 FORWARD LENGTH=349 277 9e-75
AT1G60220.1 | chr1:22208332-22211910 FORWARD LENGTH=585 86 6e-17
AT1G10570.1 | chr1:3487639-3491102 FORWARD LENGTH=572 85 9e-17
AT1G09730.1 | chr1:3148017-3154236 REVERSE LENGTH=964 54 1e-07
>AT4G15880.1 | chr4:9012769-9015797 FORWARD LENGTH=490
Length = 489
Score = 316 bits (810), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 157/288 (54%), Positives = 204/288 (70%), Gaps = 8/288 (2%)
Query: 214 YKELYEASSRRRDAKLRTLEFEVRLAEKGRLGLEQLADVLPRFGPRKED---EPFVPFTD 270
Y++L + S+ +R++KL L FE+ L EK L L P+ ++ + EPF+P T+
Sbjct: 206 YRKLMQ-SAEKRNSKLEALGFEIVLNEKK---LSLLRQSRPKTVEKRVEVPREPFIPLTE 261
Query: 271 EDEDSVDHALGGRNRRERLVVHESSNIVITRETLQCLNETEWLNDEVINLYXXXXXXXXX 330
++E V A GRNRR+ L HE+SNI IT E LQCL + WLNDEVIN+Y
Sbjct: 262 DEEAEVYRAFSGRNRRKVLATHENSNIDITGEVLQCLTPSAWLNDEVINVYLELLKERET 321
Query: 331 XXPNKFLKCHFFNTFFYKKLIT-GGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHW 389
P K+LKCH+FNTFFYKKL++ GY++K+VRRWTT+RKLGY+L++CD IFVPIH+ VHW
Sbjct: 322 REPKKYLKCHYFNTFFYKKLVSDSGYNFKAVRRWTTQRKLGYALIDCDMIFVPIHRGVHW 381
Query: 390 CLAVINIRDKKFQFLDSLGSMDMKALRTLARYLVDEVKDKSGQHIDALSWKQEGVKNLPL 449
LAVIN R+ K +LDSL +D L LA+Y+ DE +KSG+ IDA SW E V++LP
Sbjct: 382 TLAVINNRESKLLYLDSLNGVDPMILNALAKYMGDEANEKSGKKIDANSWDMEFVEDLPQ 441
Query: 450 QENGWDCGMFMLKYIDFYSRDMGLTFGQKHMHYFRKRTAKEILNLRAE 497
Q+NG+DCGMFMLKYIDF+SR +GL F Q+HM YFR RTAKEIL LRA+
Sbjct: 442 QKNGYDCGMFMLKYIDFFSRGLGLCFSQEHMPYFRLRTAKEILRLRAD 489
>AT3G06910.1 | chr3:2178905-2181188 REVERSE LENGTH=503
Length = 502
Score = 283 bits (725), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/294 (50%), Positives = 192/294 (65%), Gaps = 17/294 (5%)
Query: 214 YKELYEASSRRRDAKLRTLEFEVRLAEKGRLGLEQLADVLPRFGPRKEDEP--------F 265
Y+++ E S+ R +KL+ F E+GR L L+ R+++EP F
Sbjct: 216 YRKVLE-SAVNRTSKLKDRGFVDFFKERGRALLRSLSSFW-----RQDEEPVEVVQREAF 269
Query: 266 VPFTDEDEDSVDHALGGRNRRERLVVHESSNIVITRETLQCLNETEWLNDEVINLYXXXX 325
VP + E+E +V A N LV H++SNI IT + L+CL +WLNDEVINLY
Sbjct: 270 VPLSREEETAVRRAFSA-NDSNILVTHKNSNIDITGKILRCLKPGKWLNDEVINLYMVLL 328
Query: 326 XXXXXXXPNKFLKCHFFNTFFYKKLITG--GYDYKSVRRWTTKRKLGYSLLECDKIFVPI 383
P KFLKCHFFNTFF+ KL+ GY+Y +VRRWT+ ++LGY L +CDKIF+PI
Sbjct: 329 KEREAREPKKFLKCHFFNTFFFTKLVNSATGYNYGAVRRWTSMKRLGYHLKDCDKIFIPI 388
Query: 384 HKEVHWCLAVINIRDKKFQFLDSLGSMDMKALRTLARYLVDEVKDKSGQHIDALSWKQEG 443
H +HW LAVINI+D+KFQ+LDS + K L LARY VDEV+DKS +D W+QE
Sbjct: 389 HMNIHWTLAVINIKDQKFQYLDSFKGREPKILDALARYFVDEVRDKSEVDLDVSRWRQEF 448
Query: 444 VKNLPLQENGWDCGMFMLKYIDFYSRDMGLTFGQKHMHYFRKRTAKEILNLRAE 497
V++LP+Q NG+DCGMFM+KYIDFYSR + L F Q+ M YFR RTAKEIL L+AE
Sbjct: 449 VQDLPMQRNGFDCGMFMVKYIDFYSRGLDLCFTQEQMPYFRARTAKEILQLKAE 502
>AT4G00690.1 | chr4:281313-283129 FORWARD LENGTH=349
Length = 348
Score = 277 bits (709), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 138/244 (56%), Positives = 171/244 (70%), Gaps = 9/244 (3%)
Query: 263 EPFVPFTDEDEDSVDHALGGRNRRERLVVHESSNIVITRETLQCLNETEWLNDEVINLYX 322
EPF P +E+ V+ AL RNR++ LV H++SNI I+ ETLQCL +WLND+V NLY
Sbjct: 105 EPFQPLNEEEVALVNSALSKRNRKKILVSHKNSNIDISGETLQCLRPNQWLNDDVTNLYL 164
Query: 323 XXXXXXXXXXPNKFLKCHFFNTFFYKKLITG-GYDYKSVRRWTTKRKLGYSLLECDKIFV 381
P K+ KCHFFNTFFY KL++G GY+YK+V RWTTKRKLGY L++CD IFV
Sbjct: 165 ELLKERQTRDPQKYFKCHFFNTFFYVKLVSGSGYNYKAVSRWTTKRKLGYDLIDCDIIFV 224
Query: 382 PIHKEVHWCLAVINIRDKKFQFLDSLGS-MDMKALRTLARYLVDEVKDKSGQHIDALSWK 440
PIH ++HW L VIN R++KF +LDSL + + L +A+YLVDEVK KS ++ID SW
Sbjct: 225 PIHIDIHWTLGVINNRERKFVYLDSLFTGVGHTILNAMAKYLVDEVKQKSQKNIDVSSWG 284
Query: 441 QEGVKNLPLQENGWDCGMFMLKYIDFYSRDMGLTFGQ-------KHMHYFRKRTAKEILN 493
E V+ P Q+NG+DCGMFMLKYIDFYSR + L F Q K M YFR RTAKEIL
Sbjct: 285 MEYVEERPQQQNGYDCGMFMLKYIDFYSRGLSLQFSQVIRDVIKKDMPYFRLRTAKEILR 344
Query: 494 LRAE 497
LRA+
Sbjct: 345 LRAD 348
>AT1G60220.1 | chr1:22208332-22211910 FORWARD LENGTH=585
Length = 584
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 297 IVITRETLQCLNETEWLNDEVINLYXXXXXXXXXXXPNKFLKCHFFNTFFYKKLITGGYD 356
+ + + L+CL E+L V+N Y CHFFNT+FYKKL +
Sbjct: 343 VQVCLKDLECLAPREYLTSPVMNFYMRFLQQQISSSNQISADCHFFNTYFYKKL-SDAVT 401
Query: 357 YKS---------VRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQ----- 402
YK RRW G L IF+PIH+++HW L ++ I DKK +
Sbjct: 402 YKGNDKDAFFVRFRRWWK----GIDLFRKAYIFIPIHEDLHWSLVIVCIPDKKDESGLTI 457
Query: 403 -FLDSLGSMDMKAL-RTLARYLVDE-----VKDKS-GQHIDALSWKQ------EGVKNLP 448
LDSLG K++ + R+L DE D S I WK E V +P
Sbjct: 458 LHLDSLGLHSRKSIVENVKRFLKDEWNYLNQDDYSLDLPISEKVWKNLPRRISEAVVQVP 517
Query: 449 LQENGWDCGMFMLKYIDFYSRDMGLTFGQKHMHYFRKR 486
Q+N +DCG F+L +I + + +K + F K+
Sbjct: 518 QQKNDFDCGPFVLFFIKRFIEEAPQRLKRKDLGMFDKK 555
>AT1G10570.1 | chr1:3487639-3491102 FORWARD LENGTH=572
Length = 571
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 45/238 (18%)
Query: 261 EDEPFVPFTDEDEDSVDHALGGRNRRERLVVHESSN-------IVITRETLQCLNETEWL 313
EDEP P E+ + L + + SS+ + ++ + L+CL+ E+L
Sbjct: 294 EDEPLSPMVVEEACELPEGLPED------IYYPSSDQSDGRDLVQVSLKDLKCLSPGEYL 347
Query: 314 NDEVINLYXXXXXXXXXXXPNKFLKCHFFNTFFYKKLITGGYDYKS---------VRRWT 364
VIN Y CHFFNTFFYKKL T YK RRW
Sbjct: 348 TSPVINFYIRYVQHHVFSADKTAANCHFFNTFFYKKL-TEAVSYKGNDRDAYFVKFRRWW 406
Query: 365 TKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQ------FLDSLGSMDMKAL-RT 417
G+ L IF+PIH+++HW L +I I DK+ + LDSLG +
Sbjct: 407 K----GFDLFCKSYIFIPIHEDLHWSLVIICIPDKEDESGLTIIHLDSLGLHPRNLIFNN 462
Query: 418 LARYLVDEVKDKSGQH-----IDALSWK------QEGVKNLPLQENGWDCGMFMLKYI 464
+ R+L +E + I A W+ E +P Q+N +DCG+F+L +I
Sbjct: 463 VKRFLREEWNYLNQDAPLDLPISAKVWRDLPNMINEAEVQVPQQKNDFDCGLFLLFFI 520
>AT1G09730.1 | chr1:3148017-3154236 REVERSE LENGTH=964
Length = 963
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 350 LITGGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVI------------NIR 397
+ G + VR+WT K + D IFVP++ +HW L VI ++
Sbjct: 487 IADGKAAFLRVRKWTRK----VDMFGKDYIFVPVNYNLHWSLIVICHPGEVANRTDLDLD 542
Query: 398 DKK----FQFLDSLGSMDMKALRTLARYLVDEVKDKSGQHIDALSWKQEGVK----NLPL 449
D K +DS+ + YL +E K++ + D +S + ++ LP
Sbjct: 543 DSKKVPCILHMDSIKGSHAGLKNLVQTYLCEEWKERHKETSDDISSRFMNLRFVSLELPQ 602
Query: 450 QENGWDCGMFMLKYIDFYSRDMGLTFG 476
QEN +DCG+F+L Y++ + + L F
Sbjct: 603 QENSFDCGLFLLHYLELFLAEAPLNFS 629
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,864,320
Number of extensions: 312848
Number of successful extensions: 774
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 7
Length of query: 497
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,282,721
Effective search space: 3263392074
Effective search space used: 3263392074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)