BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0355900 Os01g0355900|AK120976
         (497 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0355900  Peptidase C48, SUMO/Sentrin/Ubl1 family protein     689   0.0  
Os03g0344300  Similar to SUMO protease                            216   2e-56
Os03g0410100  Peptidase C48, SUMO/Sentrin/Ubl1 family protein      86   6e-17

>Os01g0355900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
          Length = 497

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/389 (87%), Positives = 339/389 (87%)

Query: 109 IHGPQRVLRAFRLGSALSRSNPSCFTPSPSSPQHPRSLGLEQYVELVDSVXXXXXXXXXX 168
           IHGPQRVLRAFRLGSALSRSNPSCFTPSPSSPQHPRSLGLEQYVELVDSV          
Sbjct: 109 IHGPQRVLRAFRLGSALSRSNPSCFTPSPSSPQHPRSLGLEQYVELVDSVAHPPPLPPSP 168

Query: 169 XXXXXXXRVEVIAXXXXXXXXXXXXXXXXXXXXXXGSVVVRRVPLYKELYEASSRRRDAK 228
                  RVEVIA                      GSVVVRRVPLYKELYEASSRRRDAK
Sbjct: 169 STADAPSRVEVIAVDDAEERKDDEEAREEEEEEVKGSVVVRRVPLYKELYEASSRRRDAK 228

Query: 229 LRTLEFEVRLAEKGRLGLEQLADVLPRFGPRKEDEPFVPFTDEDEDSVDHALGGRNRRER 288
           LRTLEFEVRLAEKGRLGLEQLADVLPRFGPRKEDEPFVPFTDEDEDSVDHALGGRNRRER
Sbjct: 229 LRTLEFEVRLAEKGRLGLEQLADVLPRFGPRKEDEPFVPFTDEDEDSVDHALGGRNRRER 288

Query: 289 LVVHESSNIVITRETLQCLNETEWLNDEVINLYXXXXXXXXXXXPNKFLKCHFFNTFFYK 348
           LVVHESSNIVITRETLQCLNETEWLNDEVINLY           PNKFLKCHFFNTFFYK
Sbjct: 289 LVVHESSNIVITRETLQCLNETEWLNDEVINLYLELLKERELREPNKFLKCHFFNTFFYK 348

Query: 349 KLITGGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQFLDSLG 408
           KLITGGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQFLDSLG
Sbjct: 349 KLITGGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQFLDSLG 408

Query: 409 SMDMKALRTLARYLVDEVKDKSGQHIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYS 468
           SMDMKALRTLARYLVDEVKDKSGQHIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYS
Sbjct: 409 SMDMKALRTLARYLVDEVKDKSGQHIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYS 468

Query: 469 RDMGLTFGQKHMHYFRKRTAKEILNLRAE 497
           RDMGLTFGQKHMHYFRKRTAKEILNLRAE
Sbjct: 469 RDMGLTFGQKHMHYFRKRTAKEILNLRAE 497



>Os03g0344300 Similar to SUMO protease
          Length = 157

 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 94/145 (64%), Positives = 121/145 (83%)

Query: 353 GGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQFLDSLGSMDM 412
            GYDYKSV+RWTT+R+LGY L+ECDKIFVP+HK+VHWCLAVIN++++ FQ+LDSLG +D 
Sbjct: 13  NGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERTFQYLDSLGCVDH 72

Query: 413 KALRTLARYLVDEVKDKSGQHIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYSRDMG 472
              R LARY+ +EVKDKS + ID  +W +E V ++PLQ+NGWDCGMFMLKYIDF+SR + 
Sbjct: 73  HVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFMLKYIDFHSRGLS 132

Query: 473 LTFGQKHMHYFRKRTAKEILNLRAE 497
           ++F Q++M YFRKRT  EIL LRA+
Sbjct: 133 MSFSQENMEYFRKRTVMEILRLRAD 157



>Os03g0410100 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
          Length = 73

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query: 433 HIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYSRDMGLTFGQKHMHYFRKRTAKEIL 492
           HI+  +W       L    N WDCGMFMLK+IDF+SR +GL F Q+HM YFRKRTAKEIL
Sbjct: 9   HINDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFRKRTAKEIL 68

Query: 493 NLRAE 497
            LRA+
Sbjct: 69  RLRAD 73



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,877,753
Number of extensions: 453461
Number of successful extensions: 1228
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1238
Number of HSP's successfully gapped: 3
Length of query: 497
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 392
Effective length of database: 11,553,331
Effective search space: 4528905752
Effective search space used: 4528905752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)