Os03g0344300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SUMO protease.
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Os03g0344300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SUMO protease.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.36 | 0.19 | 9.98 | -0.727 | 0.302 | 0.282 | -0.469 | -0.306 | -0.314 | 9.72 | 20.53 | 585 | -- | -- |
| 16.63 | 0.19 | 9.97 | -0.686 | 0.308 | 0.315 | -0.366 | -- | -0.306 | 9.76 | 20.6 | 585 | -- | -- |
| 17.1 | 0.193 | 9.98 | -0.714 | 0.303 | 0.297 | -- | -0.15 | -0.308 | 9.78 | 20.6 | 553 | -- | -- |
| 17.17 | 0.193 | 9.97 | -0.688 | 0.306 | 0.314 | -- | -- | -0.302 | 9.75 | 20.6 | 559 | -- | -- |
| 21.34 | 0.216 | 9.98 | -0.692 | -- | 0.23 | -- | -0.274 | -0.29 | -- | 20.4 | 1527 | -- | -- |
| 19.57 | 0.207 | 9.96 | -0.562 | 0.266 | -- | -0.382 | -- | -0.233 | 9.88 | -- | -- | -- | -- |
| 20.13 | 0.21 | 9.96 | -0.577 | 0.267 | -- | -- | -- | -0.234 | 10 | -- | -- | -- | -- |
| 21.74 | 0.218 | 9.98 | -0.644 | -- | 0.244 | -- | -- | -0.279 | -- | 20.4 | 1527 | -- | -- |
| 28.42 | 0.248 | 9.95 | -- | 0.286 | 0.0955 | -- | -- | -0.209 | 9.87 | 22.4 | 719 | -- | -- |
| 24.43 | 0.231 | 9.97 | -0.58 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 28.89 | 0.251 | 9.94 | -- | 0.27 | -- | -- | -- | -0.17 | 10.2 | -- | -- | -- | -- |
| 31.39 | 0.261 | 9.95 | -- | -- | -0.21 | -- | -- | -0.118 | -- | 26.2 | 775 | -- | -- |
| 33.3 | 0.269 | 9.95 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.02 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 5 | 16.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 6 | 16.13 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 7 | 16.14 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 10 | 16.17 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 15 |
| 16 | 16.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 28 | 16.23 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 33 | 16.24 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 69 | 16.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 101 | 16.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 116 | 16.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 125 | 16.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 136 | 16.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 151 | 16.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 153 | 16.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 158 | 16.45 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 165 | 16.45 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 191 | 16.47 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 16 | 12 |
| 212 | 16.49 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 15 | 16 |
| 216 | 16.49 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 220 | 16.49 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 230 | 16.50 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 240 | 16.51 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 251 | 16.52 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 270 | 16.53 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 364 | 16.59 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 390 | 16.60 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 415 | 16.61 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 426 | 16.62 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 486 | 16.64 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 518 | 16.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 556 | 16.67 | temperature | 20 | 30 | > th | dose independent | rect. | 12 | 23 |
| 558 | 16.67 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 560 | 16.67 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 617 | 16.70 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 634 | 16.70 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 636 | 16.70 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 643 | 16.70 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 698 | 16.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 824 | 16.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 967 | 16.83 | atmosphere | 1005 | 270 | > th | dose independent | sin | 15 | NA |
| 983 | 16.83 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |