BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0344300 Os03g0344300|AK068651
(157 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0344300 Similar to SUMO protease 330 3e-91
Os01g0355900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 217 3e-57
Os03g0410100 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 84 6e-17
>Os03g0344300 Similar to SUMO protease
Length = 157
Score = 330 bits (846), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 IVGRLVQLACGKNGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERT 60
IVGRLVQLACGKNGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERT
Sbjct: 1 IVGRLVQLACGKNGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERT 60
Query: 61 FQYLDSLGCVDHHVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFM 120
FQYLDSLGCVDHHVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFM
Sbjct: 61 FQYLDSLGCVDHHVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFM 120
Query: 121 LKYIDFHSRGLSMSFSQENMEYFRKRTVMEILRLRAD 157
LKYIDFHSRGLSMSFSQENMEYFRKRTVMEILRLRAD
Sbjct: 121 LKYIDFHSRGLSMSFSQENMEYFRKRTVMEILRLRAD 157
>Os01g0355900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 497
Score = 217 bits (552), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 94/145 (64%), Positives = 121/145 (83%)
Query: 13 NGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERTFQYLDSLGCVDH 72
GYDYKSV+RWTT+R+LGY L+ECDKIFVP+HK+VHWCLAVIN++++ FQ+LDSLG +D
Sbjct: 353 GGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQFLDSLGSMDM 412
Query: 73 HVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFMLKYIDFHSRGLS 132
R LARY+ +EVKDKS + ID +W +E V ++PLQ+NGWDCGMFMLKYIDF+SR +
Sbjct: 413 KALRTLARYLVDEVKDKSGQHIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYSRDMG 472
Query: 133 MSFSQENMEYFRKRTVMEILRLRAD 157
++F Q++M YFRKRT EIL LRA+
Sbjct: 473 LTFGQKHMHYFRKRTAKEILNLRAE 497
>Os03g0410100 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 73
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 93 EIDTNTWHEELVDDIPLQQNGWDCGMFMLKYIDFHSRGLSMSFSQENMEYFRKRTVMEIL 152
I+ W + + N WDCGMFMLK+IDFHSRG+ + F+QE+M+YFRKRT EIL
Sbjct: 9 HINDQAWSAWICLTLNFSFNRWDCGMFMLKFIDFHSRGIGLCFTQEHMDYFRKRTAKEIL 68
Query: 153 RLRAD 157
RLRAD
Sbjct: 69 RLRAD 73
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,192,932
Number of extensions: 206212
Number of successful extensions: 811
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 823
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)